Data DOI: 10.15785/SBGRID/175 | ID: 175
Publication DOI: 10.1038/nsmb.2998
4YCZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: Sept. 25, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/175
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/175 .'
(Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/175 .'
(Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/175 .'
(Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/175 .'
(Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 175 ; shasum -c files.sha'
Storage requirements: 8.4G
Biological Sample:
Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline 24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
Feb. 22, 2014
Related Datasets:
None
Knockenhauer, KE; Kelley, K; Schwartz, T. 2015. "X-Ray Diffraction data for: Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA). PDB Code 4YCZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/175.
SeMet dataset, Nup85 derivatized only
Name | Additional Roles | Affiliation While Working on the Project |
---|---|---|
Kevin E Knockenhauer | Data Collector, Depositor | Graduate Student |
Kotaro Kelley | Data Collector | Graduate Student |
Thomas Schwartz | PI | Massachusetts Institute of Technology |
Pilatus 6M-F detector, Space group C2
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 756.96
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
ALL | LOW | HIGH | |
---|---|---|---|
High resolution limit | 3.91 | 10.59 | 3.91 |
Low resolution limit | 57.81 | 57.81 | 3.98 |
Completeness | 99.7 | 99.3 | 99.9 |
Multiplicity | 13.8 | 13.3 | 13.9 |
I/sigma | 8.0 | 41.5 | 0.6 |
Rmerge | 0.272 | 0.049 | 5.16 |
CC half | 0.998 | 0.999 | 0.366 |
Anomalous completeness | 99.2 | 99.2 | 99.3 |
Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
Cell | 105.46 | 212.57 | 170.21 | 90.0 | 107.36 | 90.0 |
---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 755.2
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
ALL | LOW | HIGH | |
---|---|---|---|
High resolution limit | 3.93 | 10.66 | 3.93 |
Low resolution limit | 106.29 | 106.33 | 4.0 |
Completeness | 99.7 | 99.1 | 99.8 |
Multiplicity | 13.8 | 13.3 | 13.8 |
I/sigma | 8.1 | 41.5 | 0.7 |
Rmerge | 0.266 | 0.048 | 4.804 |
CC half | 0.998 | 0.999 | 0.318 |
Anomalous completeness | 99.1 | 98.8 | 99.5 |
Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
Cell | 105.46 | 212.58 | 170.21 | 90.0 | 107.36 | 90.0 |
---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 761.56
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
ALL | LOW | HIGH | |
---|---|---|---|
High resolution limit | 3.7 | 10.04 | 3.7 |
Low resolution limit | 164.42 | 164.58 | 3.76 |
Completeness | 99.1 | 98.8 | 99.6 |
Multiplicity | 13.3 | 13.3 | 13.6 |
I/sigma | 5.2 | 43.0 | 0.2 |
Rmerge | 0.305 | 0.055 | 5.492 |
CC half | 0.999 | 0.999 | 0.324 |
Anomalous completeness | 97.8 | 97.3 | 98.4 |
Anomalous multiplicity | 6.8 | 6.8 | 6.8 |
Cell | 105.493 | 213.002 | 170.886 | 90.0 | 107.252 | 90.0 |
---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.