Data DOI: 10.15785/SBGRID/175 | ID: 175
Publication DOI: 10.1038/nsmb.2998
4YCZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: 25 Sep 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/175
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/175 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/175 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/175 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/175 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 175 ; shasum -c files.sha'
Storage requirements: 8.4G
Biological Sample:
Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline 24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
22 Feb 2014
Related Datasets:
None
Knockenhauer, KE; Kelley, K; Schwartz, T. 2015. "X-Ray Diffraction data for: Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA). PDB Code 4YCZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/175.
SeMet dataset, Nup85 derivatized only
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin E Knockenhauer | Data Collector, Depositor | Graduate Student |
| Kotaro Kelley | Data Collector | Graduate Student |
| Thomas Schwartz | PI | Massachusetts Institute of Technology |
Pilatus 6M-F detector, Space group C2
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 758.16
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.92 | 10.62 | 3.92 |
| Low resolution limit | 57.94 | 57.94 | 3.99 |
| Completeness | 99.7 | 99.3 | 99.9 |
| Multiplicity | 13.8 | 13.3 | 13.9 |
| I/sigma | 8.0 | 41.5 | 0.6 |
| Rmerge | 0.27 | 0.049 | 4.973 |
| CC half | 0.998 | 0.998 | 0.346 |
| Anomalous completeness | 99.1 | 99.1 | 99.4 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 105.46 | 212.56 | 170.2 | 90.0 | 107.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 755.06
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.92 | 10.64 | 3.92 |
| Low resolution limit | 106.29 | 106.33 | 3.99 |
| Completeness | 99.7 | 99.0 | 99.9 |
| Multiplicity | 13.8 | 13.3 | 13.9 |
| I/sigma | 8.0 | 41.4 | 0.7 |
| Rmerge | 0.269 | 0.049 | 4.953 |
| CC half | 0.998 | 0.998 | 0.336 |
| Anomalous completeness | 99.1 | 98.8 | 99.4 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 105.47 | 212.59 | 170.22 | 90.0 | 107.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 761.56
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.64 | 9.87 | 3.64 |
| Low resolution limit | 163.2 | 163.36 | 3.7 |
| Completeness | 99.3 | 99.2 | 94.9 |
| Multiplicity | 13.9 | 13.6 | 14.1 |
| I/sigma | 6.3 | 52.9 | 0.3 |
| Rmerge | 0.312 | 0.053 | 6.601 |
| CC half | 0.995 | 0.999 | 0.302 |
| Anomalous completeness | 98.7 | 98.8 | 94.5 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 105.493 | 213.001 | 170.887 | 90.0 | 107.253 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
