Data DOI: 10.15785/SBGRID/175 | ID: 175
Publication DOI: 10.1038/nsmb.2998
4YCZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: Sept. 25, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/175
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/175 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/175 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/175 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/175 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 175 ; shasum -c files.sha'
Storage requirements: 8.4G
Biological Sample:
Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA)
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline 24-ID-C, NE-CAT, APS, Chicago, IL
Data Creation Date:
Feb. 22, 2014
Related Datasets:
None
Knockenhauer, KE; Kelley, K; Schwartz, T. 2015. "X-Ray Diffraction data for: Y-COMPLEX HUB (NUP85-NUP120-NUP145C-SEC13 COMPLEX) FROM M. THERMOPHILA (A.K.A. T. HETEROTHALLICA). PDB Code 4YCZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/175.
SeMet dataset, Nup85 derivatized only
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin E Knockenhauer | Data Collector, Depositor | Graduate Student |
| Kotaro Kelley | Data Collector | Graduate Student |
| Thomas Schwartz | PI | Massachusetts Institute of Technology |
Pilatus 6M-F detector, Space group C2
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.58)
Distance:
750.0 -> 750.18
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.27 | 11.59 | 4.27 |
| Low resolution limit | 162.11 | 162.23 | 4.34 |
| Completeness | 90.6 | 91.6 | 93.3 |
| Multiplicity | 6.9 | 7.0 | 7.0 |
| I/sigma | 4.6 | 17.0 | 1.1 |
| Rmerge | 0.382 | 0.057 | 1.886 |
| CC half | 0.99 | 0.994 | 0.379 |
| Anomalous completeness | 82.5 | 83.5 | 86.3 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 104.799 | 117.53 | 169.558 | 82.316 | 72.955 | 63.75 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.46)
Distance:
750.0 -> 759.54
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 5.33 | 14.4 | 5.33 |
| Low resolution limit | 57.79 | 57.79 | 5.42 |
| Completeness | 99.5 | 98.5 | 100.0 |
| Multiplicity | 13.8 | 13.0 | 14.4 |
| I/sigma | 17.9 | 48.0 | 4.3 |
| Rmerge | 0.113 | 0.041 | 0.751 |
| CC half | 0.999 | 0.999 | 0.943 |
| Anomalous completeness | 99.0 | 98.0 | 99.4 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 105.45 | 212.5 | 170.15 | 90.0 | 107.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.46)
Distance:
750.0 -> 753.93
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 4.44 | 12.04 | 4.44 |
| Low resolution limit | 90.43 | 90.45 | 4.52 |
| Completeness | 99.4 | 98.8 | 99.6 |
| Multiplicity | 13.7 | 13.2 | 14.3 |
| I/sigma | 11.7 | 46.4 | 2.3 |
| Rmerge | 0.177 | 0.043 | 1.47 |
| CC half | 0.998 | 0.999 | 0.819 |
| Anomalous completeness | 98.9 | 98.5 | 99.6 |
| Anomalous multiplicity | 7.0 | 7.0 | 7.0 |
| Cell | 105.44 | 212.5 | 170.14 | 90.0 | 107.36 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9789
Sweep:
SWEEP1
Files:
/programs/datagrid/175/hse85_3_15_1_####.cbf
Images:
1 - 1440
Beam:
(216.67, 220.51) -> (216.67, 220.45)
Distance:
750.0 -> 759.5
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.89 | 10.56 | 3.89 |
| Low resolution limit | 106.57 | 106.61 | 3.96 |
| Completeness | 98.4 | 99.1 | 82.8 |
| Multiplicity | 13.4 | 13.7 | 13.6 |
| I/sigma | 7.1 | 29.2 | 1.1 |
| Rmerge | 0.307 | 0.054 | 4.094 |
| CC half | 0.998 | 0.999 | 0.604 |
| Anomalous completeness | 97.3 | 98.3 | 82.1 |
| Anomalous multiplicity | 6.8 | 6.8 | 6.8 |
| Cell | 105.581 | 213.142 | 170.964 | 90.0 | 107.261 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
