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X-Ray Diffraction data from capsid protein (C-terminal domain) from Bovine Leukemia Virus, source of 4PH1 structure

Data DOI: 10.15785/SBGRID/172 | ID: 172

Publication DOI: 10.1126/science.aaa5182

4PH1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Buschiazzo Laboratory, Institut Pasteur de Montevideo

Release Date: Sept. 8, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/172

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/172 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/172 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/172 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/172 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 172 ; shasum -c files.sha'

Storage requirements: 654M

Biological Sample:

capsid protein (C-terminal domain) from Bovine Leukemia Virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

home source (Micromax007-HF/Varimax-HF/Mar345)

Data Creation Date:

Dec. 20, 2012

Related Datasets:

None


Cite this Dataset

Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (C-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/172.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Alejandro BuschiazzoData Collector, DepositorUnit of Protein Crystallography / Institut Pasteur de Montevideo
Alejandro BuschiazzoPIInstitut Pasteur de Montevideo

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300

Images:

1 - 180

Beam:

(172.5, 172.5) -> (172.5, 172.45)

Distance:

230.0 -> 229.71

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.46 6.66 2.46
Low resolution limit 35.43 35.43 2.5
Completeness 98.8 98.2 95.9
Multiplicity 3.5 3.1 3.5
I/sigma 13.1 34.1 5.1
Rmerge 0.077 0.019 0.242
CC half 0.997 0.999 0.929
Anomalous completeness 93.4 93.2 87.8
Anomalous multiplicity 2.0 2.0 2.0
Cell 47.72 52.89 90.88 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300

Images:

1 - 180

Beam:

(172.5, 172.5) -> (172.5, 172.48)

Distance:

230.0 -> 230.13

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.46 6.66 2.46
Low resolution limit 35.43 35.43 2.5
Completeness 98.8 98.2 96.1
Multiplicity 3.5 3.1 3.5
I/sigma 12.9 33.4 5.1
Rmerge 0.077 0.019 0.244
CC half 0.997 0.999 0.926
Anomalous completeness 93.6 93.2 89.6
Anomalous multiplicity 2.0 2.0 2.0
Cell 47.72 52.89 90.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP1

Files:

/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300

Images:

1 - 180

Beam:

(172.5, 172.5) -> (172.5, 172.45)

Distance:

230.0 -> 230.15

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.17 5.89 2.17
Low resolution limit 45.72 45.73 2.21
Completeness 83.3 100.0 42.2
Multiplicity 3.4 3.3 2.6
I/sigma 11.9 23.6 0.0
Rmerge 0.096 0.03 -0.106
CC half 0.978 0.997 0.199
Anomalous completeness 78.9 98.9 37.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 47.716 52.878 90.981 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.