Data DOI: 10.15785/SBGRID/172 | ID: 172
Publication DOI: 10.1126/science.aaa5182
4PH1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Release Date: Sept. 8, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/172
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/172 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/172 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/172 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/172 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 172 ; shasum -c files.sha'
Storage requirements: 654M
Biological Sample:
capsid protein (C-terminal domain) from Bovine Leukemia Virus
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
home source (Micromax007-HF/Varimax-HF/Mar345)
Data Creation Date:
Dec. 20, 2012
Related Datasets:
None
Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (C-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/172.
native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Alejandro Buschiazzo | Data Collector, Depositor | Unit of Protein Crystallography / Institut Pasteur de Montevideo |
| Alejandro Buschiazzo | PI | Institut Pasteur de Montevideo |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300
Images:
1 - 180
Beam:
(172.5, 172.5) -> (172.5, 172.45)
Distance:
230.0 -> 229.71
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.46 | 6.66 | 2.46 |
| Low resolution limit | 35.43 | 35.43 | 2.5 |
| Completeness | 98.8 | 98.2 | 95.9 |
| Multiplicity | 3.5 | 3.1 | 3.5 |
| I/sigma | 13.1 | 34.1 | 5.1 |
| Rmerge | 0.077 | 0.019 | 0.242 |
| CC half | 0.997 | 0.999 | 0.929 |
| Anomalous completeness | 93.4 | 93.2 | 87.8 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 47.72 | 52.89 | 90.88 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300
Images:
1 - 180
Beam:
(172.5, 172.5) -> (172.5, 172.48)
Distance:
230.0 -> 230.13
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.46 | 6.66 | 2.46 |
| Low resolution limit | 35.43 | 35.43 | 2.5 |
| Completeness | 98.8 | 98.2 | 96.1 |
| Multiplicity | 3.5 | 3.1 | 3.5 |
| I/sigma | 12.9 | 33.4 | 5.1 |
| Rmerge | 0.077 | 0.019 | 0.244 |
| CC half | 0.997 | 0.999 | 0.926 |
| Anomalous completeness | 93.6 | 93.2 | 89.6 |
| Anomalous multiplicity | 2.0 | 2.0 | 2.0 |
| Cell | 47.72 | 52.89 | 90.89 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP1
Files:
/programs/datagrid/172/CTD_4_C2_x1_set_###.mar2300
Images:
1 - 180
Beam:
(172.5, 172.5) -> (172.5, 172.45)
Distance:
230.0 -> 230.15
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.17 | 5.89 | 2.17 |
| Low resolution limit | 45.72 | 45.73 | 2.21 |
| Completeness | 83.3 | 100.0 | 42.2 |
| Multiplicity | 3.4 | 3.3 | 2.6 |
| I/sigma | 11.9 | 23.6 | 0.0 |
| Rmerge | 0.096 | 0.03 | -0.106 |
| CC half | 0.978 | 0.997 | 0.199 |
| Anomalous completeness | 78.9 | 98.9 | 37.5 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 47.716 | 52.878 | 90.981 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
