X-Ray Diffraction data from capsid protein (N-terminal domain) from Bovine Leukemia Virus, source of 4PH2 structure

Data DOI: 10.15785/SBGRID/171 | ID: 171

Publication DOI: 10.1126/science.aaa5182

4PH2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Buschiazzo Laboratory, Institut Pasteur de Montevideo

Release Date: Sept. 8, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/171

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/171 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/171 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/171 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/171 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 171 ; shasum -c files.sha'

Storage requirements: 1.4G

Biological Sample:

capsid protein (N-terminal domain) from Bovine Leukemia Virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

home source (Micromax007-HF/Varimax-HF/Mar345)

Data Creation Date:

Nov. 15, 2012

Related Datasets:

None


Cite this Dataset

Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (N-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/171.

Download Citation

Dataset Description

mature NTD domain / native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Alejandro BuschiazzoData Collector, DepositorUnit of Protein Crystallography / Institut Pasteur de Montevideo
Alejandro BuschiazzoPIInstitut Pasteur de Montevideo

Reprocessing Instructions

Due to initial uncertainty in space group determination, proper completeness requires merging a first data set (collected as images NTD_h6_1_D2_x1_set_???.mar2300) with a second NTD data set (NTD_h6_1_D2_x1_set2_???.mar2300). Both sets come from the same unique crystal sample.

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300

Images:

1 - 91

Beam:

(172.5, 172.5) -> (172.5, 172.43)

Distance:

80.0 -> 80.02

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.88 1.44
Low resolution limit 14.16 14.17 1.46
Completeness 95.6 97.3 91.2
Multiplicity 4.3 3.7 4.3
I/sigma 6.3 10.3 2.2
Rmerge 0.128 0.092 0.342
CC half 0.905 0.886 0.887
Anomalous completeness 93.0 96.8 87.7
Anomalous multiplicity 2.3 2.3 2.3
Cell 40.628 55.996 103.005 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300

Images:

1 - 91

Beam:

(172.5, 172.5) -> (172.5, 172.34)

Distance:

80.0 -> 80.31

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.9 1.44
Low resolution limit 22.51 22.51 1.46
Completeness 95.0 96.1 90.6
Multiplicity 4.4 4.0 4.4
I/sigma 14.4 27.9 5.8
Rmerge 0.053 0.031 0.21
CC half 0.997 0.998 0.957
Anomalous completeness 92.5 90.1 87.3
Anomalous multiplicity 2.4 2.4 2.4
Cell 40.66 56.03 103.06 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300

Images:

1 - 91

Beam:

(172.5, 172.5) -> (172.5, 172.34)

Distance:

80.0 -> 80.32

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.91 1.44
Low resolution limit 27.73 27.74 1.46
Completeness 95.0 96.3 90.6
Multiplicity 4.4 4.0 4.4
I/sigma 14.4 27.9 5.8
Rmerge 0.053 0.031 0.211
CC half 0.997 0.998 0.961
Anomalous completeness 92.5 90.5 87.4
Anomalous multiplicity 2.4 2.4 2.4
Cell 40.66 56.03 103.06 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54179

Sweep:

SWEEP2

Files:

/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300

Images:

1 - 91

Beam:

(172.5, 172.5) -> (172.5, 172.34)

Distance:

80.0 -> 80.28

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.44 3.91 1.44
Low resolution limit 49.26 49.29 1.47
Completeness 94.1 95.2 78.9
Multiplicity 4.3 4.0 4.0
I/sigma 7.5 9.4 5.9
Rmerge 0.101 0.07 0.197
CC half 0.98 0.986 0.895
Anomalous completeness 91.5 92.9 73.6
Anomalous multiplicity 2.3 2.3 2.3
Cell 40.671 56.058 103.211 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.