Data DOI: 10.15785/SBGRID/171 | ID: 171
Publication DOI: 10.1126/science.aaa5182
4PH2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Release Date: Sept. 8, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/171
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/171 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/171 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/171 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/171 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 171 ; shasum -c files.sha'
Storage requirements: 1.4G
Biological Sample:
capsid protein (N-terminal domain) from Bovine Leukemia Virus
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
home source (Micromax007-HF/Varimax-HF/Mar345)
Data Creation Date:
Nov. 15, 2012
Related Datasets:
None
Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein (N-terminal domain) from Bovine Leukemia Virus. PDB Code 4PH2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/171.
mature NTD domain / native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Alejandro Buschiazzo | Data Collector, Depositor | Unit of Protein Crystallography / Institut Pasteur de Montevideo |
| Alejandro Buschiazzo | PI | Institut Pasteur de Montevideo |
Due to initial uncertainty in space group determination, proper completeness requires merging a first data set (collected as images NTD_h6_1_D2_x1_set_???.mar2300) with a second NTD data set (NTD_h6_1_D2_x1_set2_???.mar2300). Both sets come from the same unique crystal sample.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP2
Files:
/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300
Images:
1 - 91
Beam:
(172.5, 172.5) -> (172.5, 172.43)
Distance:
80.0 -> 80.02
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.44 | 3.88 | 1.44 |
| Low resolution limit | 14.16 | 14.17 | 1.46 |
| Completeness | 95.6 | 97.3 | 91.2 |
| Multiplicity | 4.3 | 3.7 | 4.3 |
| I/sigma | 6.3 | 10.3 | 2.2 |
| Rmerge | 0.128 | 0.092 | 0.342 |
| CC half | 0.905 | 0.886 | 0.887 |
| Anomalous completeness | 93.0 | 96.8 | 87.7 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 40.628 | 55.996 | 103.005 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP2
Files:
/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300
Images:
1 - 91
Beam:
(172.5, 172.5) -> (172.5, 172.34)
Distance:
80.0 -> 80.31
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.44 | 3.9 | 1.44 |
| Low resolution limit | 22.51 | 22.51 | 1.46 |
| Completeness | 95.0 | 96.1 | 90.6 |
| Multiplicity | 4.4 | 4.0 | 4.4 |
| I/sigma | 14.4 | 27.9 | 5.8 |
| Rmerge | 0.053 | 0.031 | 0.21 |
| CC half | 0.997 | 0.998 | 0.957 |
| Anomalous completeness | 92.5 | 90.1 | 87.3 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 40.66 | 56.03 | 103.06 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP2
Files:
/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300
Images:
1 - 91
Beam:
(172.5, 172.5) -> (172.5, 172.34)
Distance:
80.0 -> 80.32
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.44 | 3.91 | 1.44 |
| Low resolution limit | 27.73 | 27.74 | 1.46 |
| Completeness | 95.0 | 96.3 | 90.6 |
| Multiplicity | 4.4 | 4.0 | 4.4 |
| I/sigma | 14.4 | 27.9 | 5.8 |
| Rmerge | 0.053 | 0.031 | 0.211 |
| CC half | 0.997 | 0.998 | 0.961 |
| Anomalous completeness | 92.5 | 90.5 | 87.4 |
| Anomalous multiplicity | 2.4 | 2.4 | 2.4 |
| Cell | 40.66 | 56.03 | 103.06 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.54179
Sweep:
SWEEP2
Files:
/programs/datagrid/171/NTD_h6_1_D2_x1_set_###.mar2300
Images:
1 - 91
Beam:
(172.5, 172.5) -> (172.5, 172.34)
Distance:
80.0 -> 80.28
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.44 | 3.91 | 1.44 |
| Low resolution limit | 49.26 | 49.29 | 1.47 |
| Completeness | 94.1 | 95.2 | 78.9 |
| Multiplicity | 4.3 | 4.0 | 4.0 |
| I/sigma | 7.5 | 9.4 | 5.9 |
| Rmerge | 0.101 | 0.07 | 0.197 |
| CC half | 0.98 | 0.986 | 0.895 |
| Anomalous completeness | 91.5 | 92.9 | 73.6 |
| Anomalous multiplicity | 2.3 | 2.3 | 2.3 |
| Cell | 40.671 | 56.058 | 103.211 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
