Data DOI: 10.15785/SBGRID/17 | ID: 17
Publication DOI: 10.1016/j.devcel.2014.09.013
4TRK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 5 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/17
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/17 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/17 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/17 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/17 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 17 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
C. elegans HIM-3 SeMet
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Advanced Photon Source BL 24D-E
Data Creation Date:
30 Mar 2013
Related Datasets:
Rosenberg, SC; Corbett, KD. 2015. "X-Ray Diffraction data for: C. elegans HIM-3 SeMet. PDB Code 4TRK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/17.
Selenomethionine SAD dataset for C. elegans HIM-3
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Scott C Rosenberg | Data Collector | University of California, San Diego |
| Kevin D Corbett | Depositor, PI | University of California, San Diego |
Process in XDS to 2.0 Å
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP2
Files:
/programs/datagrid/17/ucsd6_16_1_###.img
Images:
80 - 156
Beam:
(155.44, 159.0) -> (155.44, 158.94)
Distance:
300.0 -> 300.25
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.95 | 5.29 | 1.95 |
| Low resolution limit | 63.39 | 63.43 | 1.98 |
| Completeness | 100.0 | 100.0 | 96.4 |
| Multiplicity | 7.0 | 7.0 | 4.3 |
| I/sigma | 14.6 | 42.5 | 1.0 |
| Rmerge | 0.086 | 0.032 | 1.393 |
| CC half | 0.996 | 0.995 | 0.405 |
| Anomalous completeness | 99.1 | 100.0 | 84.4 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 73.2 | 73.2 | 110.46 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP2
Files:
/programs/datagrid/17/ucsd6_16_1_###.img
Images:
80 - 156
Beam:
(155.44, 159.0) -> (155.44, 158.94)
Distance:
300.0 -> 300.17
Spacegroup:
P 61
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.95 | 5.29 | 1.95 |
| Low resolution limit | 63.39 | 63.43 | 1.98 |
| Completeness | 100.0 | 100.0 | 96.4 |
| Multiplicity | 7.0 | 7.0 | 4.3 |
| I/sigma | 14.6 | 42.6 | 1.0 |
| Rmerge | 0.086 | 0.032 | 1.387 |
| CC half | 0.997 | 0.995 | 0.408 |
| Anomalous completeness | 99.1 | 100.0 | 84.4 |
| Anomalous multiplicity | 3.6 | 3.6 | 3.6 |
| Cell | 73.2 | 73.2 | 110.46 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
