X-Ray Diffraction data from capsid protein from Bovine Leukemia Virus, source of 4PH0 structure

Data DOI: 10.15785/SBGRID/169 | ID: 169

Publication DOI: 10.1126/science.aaa5182

4PH0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Buschiazzo Laboratory, Institut Pasteur de Montevideo

Release Date: Sept. 8, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/169

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/169 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/169 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/169 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/169 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 169 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

capsid protein from Bovine Leukemia Virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline Proxima 1, Soleil Synchrotron, France

Data Creation Date:

Nov. 23, 2013

Related Datasets:

None


Cite this Dataset

Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein from Bovine Leukemia Virus. PDB Code 4PH0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/169.

Download Citation

Dataset Description

native (non-engineered) construct of full-length capsid

Project Members

Name Additional Roles Affiliation While Working on the Project
Alejandro BuschiazzoData Collector, DepositorUnit of Protein Crystallography / Institut Pasteur de Montevideo
Alejandro BuschiazzoPIInstitut Pasteur de Montevideo

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97857

Sweep:

SWEEP1

Files:

/programs/datagrid/169/IPX11B_1_####.cbf

Images:

1 - 1800

Beam:

(226.25, 203.33) -> (226.25, 203.03)

Distance:

532.9 -> 530.74

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.57 6.97 2.57
Low resolution limit 40.82 40.83 2.61
Completeness 100.0 100.0 100.0
Multiplicity 18.8 15.7 17.7
I/sigma 13.3 29.2 1.1
Rmerge 0.127 0.089 2.437
CC half 0.998 0.998 0.507
Anomalous completeness 99.9 99.7 99.9
Anomalous multiplicity 10.4 10.4 10.4
Cell 94.28 94.28 257.24 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97857

Sweep:

SWEEP1

Files:

/programs/datagrid/169/IPX11B_1_####.cbf

Images:

1 - 1800

Beam:

(226.25, 203.33) -> (226.25, 203.03)

Distance:

532.9 -> 530.7

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.58 7.0 2.58
Low resolution limit 85.74 85.78 2.62
Completeness 100.0 100.0 100.0
Multiplicity 18.8 15.5 17.9
I/sigma 13.6 29.1 1.2
Rmerge 0.125 0.088 2.325
CC half 0.997 0.997 0.516
Anomalous completeness 99.9 99.7 100.0
Anomalous multiplicity 10.4 10.4 10.4
Cell 94.26 94.26 257.21 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.