Data DOI: 10.15785/SBGRID/169 | ID: 169
Publication DOI: 10.1126/science.aaa5182
4PH0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Buschiazzo Laboratory, Institut Pasteur de Montevideo
Release Date: 8 Sep 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/169
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/169 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/169 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/169 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/169 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 169 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
capsid protein from Bovine Leukemia Virus
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline Proxima 1, Soleil Synchrotron, France
Data Creation Date:
23 Nov 2013
Related Datasets:
None
Buschiazzo, A. 2015. "X-Ray Diffraction data for: capsid protein from Bovine Leukemia Virus. PDB Code 4PH0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/169.
native (non-engineered) construct of full-length capsid
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Alejandro Buschiazzo | Data Collector, Depositor | Unit of Protein Crystallography / Institut Pasteur de Montevideo |
| Alejandro Buschiazzo | PI | Institut Pasteur de Montevideo |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97857
Sweep:
SWEEP1
Files:
/programs/datagrid/169/IPX11B_1_####.cbf
Images:
1 - 1800
Beam:
(226.25, 203.33) -> (226.25, 203.03)
Distance:
532.9 -> 530.8
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.8 | 2.51 |
| Low resolution limit | 40.82 | 40.83 | 2.55 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 18.8 | 16.0 | 16.6 |
| I/sigma | 12.5 | 29.1 | 0.7 |
| Rmerge | 0.13 | 0.091 | 3.323 |
| CC half | 0.998 | 0.998 | 0.338 |
| Anomalous completeness | 100.0 | 99.9 | 99.9 |
| Anomalous multiplicity | 10.3 | 10.3 | 10.3 |
| Cell | 94.27 | 94.27 | 257.23 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97857
Sweep:
SWEEP1
Files:
/programs/datagrid/169/IPX11B_1_####.cbf
Images:
1 - 1800
Beam:
(226.25, 203.33) -> (226.25, 203.04)
Distance:
532.9 -> 532.17
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.51 | 6.81 | 2.51 |
| Low resolution limit | 85.74 | 85.79 | 2.55 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 18.8 | 15.8 | 16.6 |
| I/sigma | 12.6 | 29.3 | 0.7 |
| Rmerge | 0.128 | 0.089 | 3.264 |
| CC half | 0.999 | 0.998 | 0.353 |
| Anomalous completeness | 100.0 | 99.9 | 99.9 |
| Anomalous multiplicity | 10.3 | 10.3 | 10.3 |
| Cell | 94.26 | 94.26 | 257.21 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97857
Sweep:
SWEEP1
Files:
/programs/datagrid/169/IPX11B_1_####.cbf
Images:
1 - 1800
Beam:
(226.25, 203.33) -> (226.25, 203.04)
Distance:
532.9 -> 531.32
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.42 | 6.57 | 2.42 |
| Low resolution limit | 257.24 | 258.7 | 2.46 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 18.3 | 16.4 | 13.8 |
| I/sigma | 8.9 | 33.0 | 0.2 |
| Rmerge | 0.138 | 0.101 | 3.254 |
| CC half | 0.999 | 0.998 | 0.336 |
| Anomalous completeness | 100.0 | 100.0 | 99.8 |
| Anomalous multiplicity | 10.0 | 10.0 | 10.0 |
| Cell | 94.259 | 94.259 | 257.236 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
