X-Ray Diffraction data from Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens, source of 4YD8 structure

Data DOI: 10.15785/SBGRID/167 | ID: 167

Publication DOI: 10.1074/jbc.M115.649202

4YD8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schwartz Laboratory, Massachusetts Institute of Technology

Release Date: Sept. 18, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/167

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/167 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/167 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/167 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/167 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 167 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 24-ID-C, NE-CAT, APS, Chicago, IL, ADSC QUANTUM 315 Detector

Data Creation Date:

Aug. 20, 2011

Related Datasets:

None


Cite this Dataset

Knockenhauer, KE; Schwartz, T. 2015. "X-Ray Diffraction data for: Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens. PDB Code 4YD8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/167.

Download Citation

Dataset Description

SeMet dataset.

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin E KnockenhauerData Collector, DepositorGraduate Student
Thomas SchwartzPIMassachusetts Institute of Technology

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/167/kk10_se_b2_1_###.img

Images:

1 - 180

Beam:

(157.96, 156.52) -> (157.96, 156.18)

Distance:

250.0 -> 251.27

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.81 4.91 1.81
Low resolution limit 72.55 72.6 1.84
Completeness 99.9 99.4 100.0
Multiplicity 3.6 3.5 3.7
I/sigma 10.8 24.2 1.4
Rmerge 0.065 0.034 0.837
CC half 0.995 0.991 0.548
Anomalous completeness 98.8 98.3 98.8
Anomalous multiplicity 1.9 1.9 1.9
Cell 136.46 81.87 85.652 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/167/kk10_se_b2_1_###.img

Images:

1 - 180

Beam:

(157.96, 156.52) -> (157.96, 156.11)

Distance:

250.0 -> 250.94

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.83 4.97 1.83
Low resolution limit 44.68 44.69 1.86
Completeness 65.6 56.1 69.8
Multiplicity 1.5 1.7 1.4
I/sigma 4.9 9.6 1.0
Rmerge 0.089 0.186 0.349
CC half 0.9 0.91 0.392
Anomalous completeness 30.6 41.9 25.5
Anomalous multiplicity 1.0 1.0 1.0
Cell 81.84 85.64 136.44 90.04 90.03 90.01

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/167/kk10_se_b2_1_###.img

Images:

1 - 180

Beam:

(157.96, 156.52) -> (157.96, 156.11)

Distance:

250.0 -> 251.24

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 40.17 40.18 1.83
Completeness 99.8 97.4 100.0
Multiplicity 3.6 3.4 3.7
I/sigma 12.7 32.1 1.1
Rmerge 0.045 0.023 0.983
CC half 0.997 0.994 0.488
Anomalous completeness 97.2 89.9 98.9
Anomalous multiplicity 1.9 1.9 1.9
Cell 136.46 81.86 85.67 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/167/kk10_se_b2_1_###.img

Images:

1 - 180

Beam:

(157.96, 156.52) -> (157.96, 156.09)

Distance:

250.0 -> 251.43

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.86 7.75 2.86
Low resolution limit 36.11 36.11 2.91
Completeness 54.0 17.0 0.6
Multiplicity 2.9 1.3 1.1
I/sigma 22.9 26.0 10.3
Rmerge 0.032 0.018 0.0
CC half 0.995 0.966 0.0
Anomalous completeness 44.5 3.4 0.1
Anomalous multiplicity 1.7 1.7 1.7
Cell 136.642 81.934 85.755 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.