Data DOI: 10.15785/SBGRID/167 | ID: 167
Publication DOI: 10.1074/jbc.M115.649202
4YD8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: 18 Sep 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/167
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/167 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/167 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/167 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/167 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 167 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
beamline 24-ID-C, NE-CAT, APS, Chicago, IL, ADSC QUANTUM 315 Detector
Data Creation Date:
20 Aug 2011
Related Datasets:
None
Knockenhauer, KE; Schwartz, T. 2015. "X-Ray Diffraction data for: Bardet-Biedl Syndrome 9 Protein (aa1-407), Homo sapiens. PDB Code 4YD8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/167.
SeMet dataset.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin E Knockenhauer | Data Collector, Depositor | Graduate Student |
| Thomas Schwartz | PI | Massachusetts Institute of Technology |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/167/kk10_se_b2_1_###.img
Images:
1 - 180
Beam:
(157.96, 156.52) -> (157.96, 156.11)
Distance:
250.0 -> 251.0
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.78 | 4.83 | 1.78 |
| Low resolution limit | 44.67 | 44.68 | 1.81 |
| Completeness | 96.5 | 89.9 | 98.1 |
| Multiplicity | 1.9 | 2.0 | 1.9 |
| I/sigma | 8.9 | 24.5 | 0.8 |
| Rmerge | 0.046 | 0.023 | 0.932 |
| CC half | 0.993 | 0.986 | 0.35 |
| Anomalous completeness | 61.3 | 73.2 | 56.2 |
| Anomalous multiplicity | 1.2 | 1.2 | 1.2 |
| Cell | 85.62 | 81.8 | 136.39 | 90.0 | 90.05 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/167/kk10_se_b2_1_###.img
Images:
1 - 180
Beam:
(157.96, 156.52) -> (157.96, 156.09)
Distance:
250.0 -> 251.24
Spacegroup:
P 21 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.7 | 1.73 |
| Low resolution limit | 85.69 | 85.8 | 1.76 |
| Completeness | 99.9 | 99.7 | 98.7 |
| Multiplicity | 3.6 | 3.6 | 2.9 |
| I/sigma | 12.4 | 56.1 | 0.5 |
| Rmerge | 0.06 | 0.033 | 1.199 |
| CC half | 0.992 | 0.979 | 0.021 |
| Anomalous completeness | 97.8 | 98.7 | 71.8 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 81.878 | 85.694 | 136.554 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
