X-Ray Diffraction data from SCCmecIV Cch in complex with AMPPNP and Mg, source of 5DGK structure

Data DOI: 10.15785/SBGRID/166 | ID: 166

Publication DOI: 10.1038/nsmb.3286

5DGK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rice Laboratory, University of Chicago

Release Date: 16 Aug 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/166

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/166 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/166 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/166 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/166 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 166 ; shasum -c files.sha'

Storage requirements: 8.8G

Biological Sample:

SCCmecIV Cch in complex with AMPPNP and Mg

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

beamline 19ID, SBC, APS, ChicaGO, IL

Data Creation Date:

21 Jul 2013

Related Datasets:

None


Cite this Dataset

Mir Sanchis, I; Rice, P. 2016. "X-Ray Diffraction data for: SCCmecIV Cch in complex with AMPPNP and Mg. PDB Code 5DGK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/166.

Download Citation

Dataset Description

SeMet dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Ignacio Mir SanchisData Collector, DepositorUniversity of Chicago
Phoebe RicePIUniversity of Chicago

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/166/puck5x3anotherdata.####.img

Images:

1 - 500

Beam:

(154.5, 159.98) -> (154.5, 161.64)

Distance:

499.5 -> 499.43

Spacegroup:

P 31

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.12 8.46 3.12
Low resolution limit 51.04 51.04 3.17
Completeness 98.3 99.0 98.0
Multiplicity 7.8 7.6 6.3
I/sigma 6.6 22.1 1.0
Rmerge 0.213 0.037 2.056
CC half 0.997 0.999 0.561
Anomalous completeness 97.2 97.1 96.9
Anomalous multiplicity 3.9 3.9 3.9
Cell 110.09 110.09 302.12 90.0 90.0 120.0

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97927

Sweep:

SWEEP1

Files:

/programs/datagrid/166/puck5x3anotherdata.####.img

Images:

1 - 500

Beam:

(154.5, 159.98) -> (154.5, 161.65)

Distance:

499.5 -> 500.0

Spacegroup:

H 3

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.73 7.4 2.73
Low resolution limit 50.45 50.46 2.78
Completeness 94.2 100.0 53.7
Multiplicity 6.4 7.7 1.6
I/sigma 10.4 39.0 0.8
Rmerge 0.083 0.033 0.728
CC half 0.979 0.962 0.211
Anomalous completeness 86.2 99.9 15.3
Anomalous multiplicity 3.3 3.3 3.3
Cell 110.1 110.1 302.684 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.