Data DOI: 10.15785/SBGRID/166 | ID: 166
Publication DOI: 10.1038/nsmb.3286
5DGK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rice Laboratory, University of Chicago
Release Date: 16 Aug 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/166
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/166 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/166 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/166 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/166 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 166 ; shasum -c files.sha'
Storage requirements: 8.8G
Biological Sample:
SCCmecIV Cch in complex with AMPPNP and Mg
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
beamline 19ID, SBC, APS, ChicaGO, IL
Data Creation Date:
21 Jul 2013
Related Datasets:
None
Mir Sanchis, I; Rice, P. 2016. "X-Ray Diffraction data for: SCCmecIV Cch in complex with AMPPNP and Mg. PDB Code 5DGK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/166.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ignacio Mir Sanchis | Data Collector, Depositor | University of Chicago |
| Phoebe Rice | PI | University of Chicago |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.63)
Distance:
499.5 -> 497.72
Spacegroup:
P 31
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.13 | 8.48 | 3.13 |
| Low resolution limit | 51.75 | 51.76 | 3.18 |
| Completeness | 98.3 | 93.1 | 98.2 |
| Multiplicity | 7.8 | 7.6 | 6.5 |
| I/sigma | 6.7 | 20.4 | 1.0 |
| Rmerge | 0.233 | 0.044 | 2.087 |
| CC half | 0.996 | 0.998 | 0.587 |
| Anomalous completeness | 97.3 | 90.5 | 97.0 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 110.16 | 110.16 | 302.3 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.62)
Distance:
499.5 -> 496.03
Spacegroup:
P 31
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.11 | 8.43 | 3.11 |
| Low resolution limit | 54.19 | 54.2 | 3.16 |
| Completeness | 98.2 | 93.9 | 98.5 |
| Multiplicity | 7.8 | 7.6 | 6.1 |
| I/sigma | 6.5 | 20.6 | 1.0 |
| Rmerge | 0.244 | 0.043 | 2.095 |
| CC half | 0.995 | 0.998 | 0.56 |
| Anomalous completeness | 97.1 | 91.2 | 97.1 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 110.16 | 110.16 | 302.34 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.65)
Distance:
499.5 -> 500.0
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.73 | 7.4 | 2.73 |
| Low resolution limit | 50.45 | 50.46 | 2.78 |
| Completeness | 94.2 | 100.0 | 53.7 |
| Multiplicity | 6.4 | 7.7 | 1.6 |
| I/sigma | 10.4 | 38.7 | 0.8 |
| Rmerge | 0.083 | 0.033 | 0.729 |
| CC half | 0.978 | 0.961 | 0.208 |
| Anomalous completeness | 86.2 | 99.8 | 15.3 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 110.1 | 110.1 | 302.684 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
