Data DOI: 10.15785/SBGRID/166 | ID: 166
Publication DOI: 10.1038/nsmb.3286
5DGK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rice Laboratory, University of Chicago
Release Date: Aug. 16, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/166
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/166 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/166 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/166 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/166 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 166 ; shasum -c files.sha'
Storage requirements: 8.8G
Biological Sample:
SCCmecIV Cch in complex with AMPPNP and Mg
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
beamline 19ID, SBC, APS, ChicaGO, IL
Data Creation Date:
July 21, 2013
Related Datasets:
None
Mir Sanchis, I; Rice, P. 2016. "X-Ray Diffraction data for: SCCmecIV Cch in complex with AMPPNP and Mg. PDB Code 5DGK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/166.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ignacio Mir Sanchis | Data Collector, Depositor | University of Chicago |
| Phoebe Rice | PI | University of Chicago |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.64)
Distance:
499.5 -> 499.09
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.84 | 7.7 | 2.84 |
| Low resolution limit | 51.07 | 51.07 | 2.89 |
| Completeness | 98.4 | 99.6 | 90.0 |
| Multiplicity | 7.1 | 7.6 | 3.6 |
| I/sigma | 13.6 | 46.3 | 1.0 |
| Rmerge | 0.091 | 0.028 | 1.74 |
| CC half | 0.998 | 0.998 | 0.539 |
| Anomalous completeness | 97.3 | 97.2 | 84.0 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 110.17 | 110.17 | 302.27 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.62)
Distance:
499.5 -> 503.92
Spacegroup:
P 31
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.08 | 8.35 | 3.08 |
| Low resolution limit | 59.24 | 59.25 | 3.13 |
| Completeness | 98.7 | 99.4 | 98.7 |
| Multiplicity | 7.7 | 7.6 | 5.6 |
| I/sigma | 6.5 | 22.3 | 0.9 |
| Rmerge | 0.21 | 0.036 | 1.961 |
| CC half | 0.997 | 0.999 | 0.551 |
| Anomalous completeness | 97.7 | 97.4 | 97.4 |
| Anomalous multiplicity | 3.9 | 3.9 | 3.9 |
| Cell | 110.15 | 110.15 | 302.3 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.65)
Distance:
499.5 -> 499.76
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.86 | 7.74 | 2.86 |
| Low resolution limit | 39.34 | 39.35 | 2.91 |
| Completeness | 98.4 | 100.0 | 83.0 |
| Multiplicity | 6.8 | 7.7 | 2.5 |
| I/sigma | 11.5 | 42.2 | 0.8 |
| Rmerge | 0.091 | 0.031 | 2.628 |
| CC half | 0.998 | 0.997 | 0.576 |
| Anomalous completeness | 94.6 | 99.7 | 51.7 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 110.057 | 110.057 | 302.379 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
