Data DOI: 10.15785/SBGRID/166 | ID: 166
Publication DOI: 10.1038/nsmb.3286
5DGK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rice Laboratory, University of Chicago
Release Date: Aug. 16, 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/166
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/166 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/166 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/166 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/166 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 166 ; shasum -c files.sha'
Storage requirements: 8.8G
Biological Sample:
SCCmecIV Cch in complex with AMPPNP and Mg
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
beamline 19ID, SBC, APS, ChicaGO, IL
Data Creation Date:
July 21, 2013
Related Datasets:
None
Mir Sanchis, I; Rice, P. 2016. "X-Ray Diffraction data for: SCCmecIV Cch in complex with AMPPNP and Mg. PDB Code 5DGK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/166.
SeMet dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Ignacio Mir Sanchis | Data Collector, Depositor | University of Chicago |
| Phoebe Rice | PI | University of Chicago |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.64)
Distance:
499.5 -> 498.47
Spacegroup:
P 31
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.83 | 7.67 | 2.83 |
| Low resolution limit | 51.75 | 51.76 | 2.88 |
| Completeness | 98.6 | 100.0 | 89.8 |
| Multiplicity | 6.9 | 7.6 | 3.6 |
| I/sigma | 5.7 | 22.4 | 0.5 |
| Rmerge | 0.22 | 0.038 | 4.428 |
| CC half | 0.997 | 0.998 | 0.33 |
| Anomalous completeness | 96.8 | 98.6 | 83.2 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 110.15 | 110.15 | 302.3 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.64)
Distance:
499.5 -> 499.11
Spacegroup:
P 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.85 | 7.71 | 2.85 |
| Low resolution limit | 35.83 | 35.83 | 2.9 |
| Completeness | 98.9 | 99.8 | 91.0 |
| Multiplicity | 6.8 | 6.7 | 3.5 |
| I/sigma | 1.2 | 3.4 | 0.2 |
| Rmerge | 0.463 | 0.224 | 4.204 |
| CC half | 0.931 | 0.926 | 0.298 |
| Anomalous completeness | 96.8 | 97.5 | 81.9 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 110.23 | 110.23 | 302.04 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97927
Sweep:
SWEEP1
Files:
/programs/datagrid/166/puck5x3anotherdata.####.img
Images:
1 - 500
Beam:
(154.5, 159.98) -> (154.5, 161.64)
Distance:
499.5 -> 499.52
Spacegroup:
R 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.64 | 7.16 | 2.64 |
| Low resolution limit | 50.39 | 50.4 | 2.69 |
| Completeness | 94.0 | 100.0 | 63.9 |
| Multiplicity | 6.3 | 7.8 | 2.6 |
| I/sigma | 4.4 | 33.1 | 0.0 |
| Rmerge | 0.112 | 0.043 | -5.303 |
| CC half | 0.997 | 0.997 | 0.424 |
| Anomalous completeness | 90.5 | 99.5 | 46.6 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 109.973 | 109.973 | 302.434 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
