Data DOI: 10.15785/SBGRID/165 | ID: 165
Publication DOI: 10.1016/j.molcel.2014.11.021
4PGZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schlessinger Laboratory, Yale University School of Medicine
Release Date: Oct. 6, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/165
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/165 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/165 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/165 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/165 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 165 ; shasum -c files.sha'
Storage requirements: 2.0G
Biological Sample:
human KIT D4D5 harboring oncogenic mutation T417I, Δ418,419
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
X25 NSLS, Brookhaven National Laboratory
Data Creation Date:
April 27, 2011
Related Datasets:
None
Reshetnyak, AV; Schlessinger, J. 2015. "X-Ray Diffraction data for: human KIT D4D5 harboring oncogenic mutation T417I, Δ418,419. PDB Code 4PGZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/165.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Andrey V Reshetnyak | Data Collector, Depositor | Yale |
| Joseph Schlessinger | PI | Yale University School of Medicine |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/165/417Tr16A4_3_6_#####.cbf
Images:
1 - 330
Beam:
(224.46, 221.02) -> (224.46, 220.79)
Distance:
400.0 -> 400.37
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.2 | 5.97 | 2.2 |
| Low resolution limit | 72.47 | 72.51 | 2.24 |
| Completeness | 100.0 | 99.8 | 99.7 |
| Multiplicity | 5.6 | 5.6 | 4.6 |
| I/sigma | 8.1 | 18.3 | 1.2 |
| Rmerge | 0.1 | 0.069 | 1.271 |
| CC half | 0.993 | 0.986 | 0.473 |
| Anomalous completeness | 98.4 | 98.1 | 95.9 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 163.319 | 63.376 | 81.461 | 90.0 | 117.436 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/165/417Tr16A4_3_6_#####.cbf
Images:
1 - 330
Beam:
(224.46, 221.02) -> (224.46, 220.69)
Distance:
400.0 -> 399.63
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.32 | 6.28 | 2.32 |
| Low resolution limit | 33.1 | 33.11 | 2.36 |
| Completeness | 99.7 | 99.5 | 99.7 |
| Multiplicity | 6.2 | 5.8 | 6.4 |
| I/sigma | 10.1 | 21.5 | 1.2 |
| Rmerge | 0.086 | 0.061 | 1.471 |
| CC half | 0.995 | 0.991 | 0.453 |
| Anomalous completeness | 98.4 | 97.2 | 99.2 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 163.52 | 63.5 | 81.53 | 90.0 | 117.46 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/165/417Tr16A4_3_6_#####.cbf
Images:
1 - 330
Beam:
(224.46, 221.02) -> (224.46, 220.7)
Distance:
400.0 -> 400.21
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.3 | 6.24 | 2.3 |
| Low resolution limit | 72.34 | 72.38 | 2.34 |
| Completeness | 99.7 | 99.5 | 99.6 |
| Multiplicity | 6.2 | 5.8 | 6.1 |
| I/sigma | 9.9 | 21.3 | 1.1 |
| Rmerge | 0.087 | 0.061 | 1.599 |
| CC half | 0.995 | 0.992 | 0.409 |
| Anomalous completeness | 98.4 | 97.1 | 98.9 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 163.51 | 63.5 | 81.53 | 90.0 | 117.46 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.1
Sweep:
SWEEP1
Files:
/programs/datagrid/165/417Tr16A4_3_6_#####.cbf
Images:
1 - 330
Beam:
(224.46, 221.02) -> (224.46, 220.7)
Distance:
400.0 -> 399.88
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.25 | 6.1 | 2.25 |
| Low resolution limit | 72.69 | 72.73 | 2.28 |
| Completeness | 99.7 | 99.8 | 93.5 |
| Multiplicity | 6.0 | 5.9 | 5.3 |
| I/sigma | 8.3 | 17.5 | 1.2 |
| Rmerge | 0.095 | 0.068 | 1.272 |
| CC half | 0.993 | 0.985 | 0.503 |
| Anomalous completeness | 98.8 | 98.6 | 92.3 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 163.8 | 63.64 | 81.654 | 90.0 | 117.436 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
