X-Ray Diffraction data from human KIT D4D5 harboring oncogenic mutation T417I, Δ418,419, source of 4PGZ structure

Data DOI: 10.15785/SBGRID/165 | ID: 165

Publication DOI: 10.1016/j.molcel.2014.11.021

4PGZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schlessinger Laboratory, Yale University School of Medicine

Release Date: Oct. 6, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/165

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/165 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/165 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/165 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/165 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 165 ; shasum -c files.sha'

Storage requirements: 2.0G

Biological Sample:

human KIT D4D5 harboring oncogenic mutation T417I, Δ418,419

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

X25 NSLS, Brookhaven National Laboratory

Data Creation Date:

April 27, 2011

Related Datasets:

None


Cite this Dataset

Reshetnyak, AV; Schlessinger, J. 2015. "X-Ray Diffraction data for: human KIT D4D5 harboring oncogenic mutation T417I, Δ418,419. PDB Code 4PGZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/165.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Andrey V ReshetnyakData Collector, DepositorYale
Joseph SchlessingerPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/165/417Tr16A4_3_6_#####.cbf

Images:

1 - 330

Beam:

(224.46, 221.02) -> (224.46, 220.79)

Distance:

400.0 -> 400.37

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.2 5.97 2.2
Low resolution limit 72.47 72.51 2.24
Completeness 100.0 99.8 99.7
Multiplicity 5.6 5.6 4.6
I/sigma 8.1 18.3 1.2
Rmerge 0.1 0.069 1.271
CC half 0.993 0.986 0.473
Anomalous completeness 98.4 98.1 95.9
Anomalous multiplicity 2.9 2.9 2.9
Cell 163.319 63.376 81.461 90.0 117.436 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/165/417Tr16A4_3_6_#####.cbf

Images:

1 - 330

Beam:

(224.46, 221.02) -> (224.46, 220.69)

Distance:

400.0 -> 399.63

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.32 6.28 2.32
Low resolution limit 33.1 33.11 2.36
Completeness 99.7 99.5 99.7
Multiplicity 6.2 5.8 6.4
I/sigma 10.1 21.5 1.2
Rmerge 0.086 0.061 1.471
CC half 0.995 0.991 0.453
Anomalous completeness 98.4 97.2 99.2
Anomalous multiplicity 3.2 3.2 3.2
Cell 163.52 63.5 81.53 90.0 117.46 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/165/417Tr16A4_3_6_#####.cbf

Images:

1 - 330

Beam:

(224.46, 221.02) -> (224.46, 220.7)

Distance:

400.0 -> 400.21

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.3 6.24 2.3
Low resolution limit 72.34 72.38 2.34
Completeness 99.7 99.5 99.6
Multiplicity 6.2 5.8 6.1
I/sigma 9.9 21.3 1.1
Rmerge 0.087 0.061 1.599
CC half 0.995 0.992 0.409
Anomalous completeness 98.4 97.1 98.9
Anomalous multiplicity 3.2 3.2 3.2
Cell 163.51 63.5 81.53 90.0 117.46 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/165/417Tr16A4_3_6_#####.cbf

Images:

1 - 330

Beam:

(224.46, 221.02) -> (224.46, 220.7)

Distance:

400.0 -> 399.88

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.25 6.1 2.25
Low resolution limit 72.69 72.73 2.28
Completeness 99.7 99.8 93.5
Multiplicity 6.0 5.9 5.3
I/sigma 8.3 17.5 1.2
Rmerge 0.095 0.068 1.272
CC half 0.993 0.985 0.503
Anomalous completeness 98.8 98.6 92.3
Anomalous multiplicity 3.1 3.1 3.1
Cell 163.8 63.64 81.654 90.0 117.436 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.