X-Ray Diffraction data from human KIT D4D5 in complex with Fab19, source of 4K94 structure

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Data DOI: 10.15785/SBGRID/164 | ID: 164

Publication DOI: 10.1073/pnas.1317118110

4K94 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schlessinger Laboratory, Yale University School of Medicine

Release Date: Oct. 6, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/164

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/164 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/164 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/164 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/164 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 164 ; shasum -c files.sha'

Storage requirements: 1.1G

Biological Sample:

human KIT D4D5 in complex with Fab19

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

X25 NSLS, Brookhaven National Laboratory

Data Creation Date:

June 27, 2011

Related Datasets:

None


Cite this Dataset

Reshetnyak, AV; Schlessinger, J. 2015. "X-Ray Diffraction data for: human KIT D4D5 in complex with Fab19. PDB Code 4K94", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/164.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Andrey V ReshetnyakData Collector, DepositorYale
Joseph SchlessingerPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=2d /programs/datagrid//164/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3d /programs/datagrid//164/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=3dii /programs/datagrid//164/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/1.14.12/bin.capsules//xia2 pipeline=dials /programs/datagrid//164/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.1

Sweep:

SWEEP1

Files:

/programs/datagrid/164/KIT19_1_13_#####.cbf

Images:

1 - 180

Beam:

(224.46, 221.02) -> (224.46, 220.14)

Distance:

450.0 -> 447.37

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.29 6.21 2.29
Low resolution limit 46.18 46.19 2.33
Completeness 96.1 99.9 68.3
Multiplicity 3.0 3.0 2.5
I/sigma 8.2 39.6 0.3
Rmerge 0.067 0.025 1.274
CC half 0.997 0.998 0.316
Anomalous completeness 85.9 93.3 48.0
Anomalous multiplicity 1.6 1.6 1.6
Cell 169.614 48.908 106.739 90.0 122.45 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.