X-Ray Diffraction data from human KIT D4D5 in complex with Fab79D, source of 4K9E structure

Data DOI: 10.15785/SBGRID/163 | ID: 163

Publication DOI: 10.1073/pnas.1317118110

4K9E Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schlessinger Laboratory, Yale University School of Medicine

Release Date: Oct. 6, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/163

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/163 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/163 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/163 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/163 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 163 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

human KIT D4D5 in complex with Fab79D

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

X29 NSLS, Brookhaven National Laboratory

Data Creation Date:

March 21, 2013

Related Datasets:

None


Cite this Dataset

Reshetnyak, AV; Schlessinger, J. 2015. "X-Ray Diffraction data for: human KIT D4D5 in complex with Fab79D. PDB Code 4K9E", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/163.

Download Citation

Dataset Description

Native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Andrey V ReshetnyakData Collector, DepositorYale
Joseph SchlessingerPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/163/79D_1_12_###.img

Images:

1 - 902

Beam:

(158.1, 156.5) -> (158.1, 156.99)

Distance:

330.0 -> 330.72

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.45 6.64 2.45
Low resolution limit 43.26 43.26 2.49
Completeness 99.6 100.0 99.6
Multiplicity 10.5 8.9 10.8
I/sigma 17.8 53.6 1.3
Rmerge 0.081 0.024 2.128
CC half 1.0 1.0 0.701
Anomalous completeness 99.3 100.0 99.4
Anomalous multiplicity 5.8 5.8 5.8
Cell 94.59 94.59 321.01 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/163/79D_1_12_###.img

Images:

1 - 902

Beam:

(158.1, 156.5) -> (158.1, 156.99)

Distance:

330.0 -> 331.43

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.45 6.65 2.45
Low resolution limit 57.33 57.34 2.49
Completeness 99.5 100.0 99.4
Multiplicity 10.5 8.9 10.8
I/sigma 17.8 53.6 1.3
Rmerge 0.081 0.024 2.135
CC half 1.0 1.0 0.684
Anomalous completeness 99.2 100.0 99.3
Anomalous multiplicity 5.8 5.8 5.8
Cell 94.59 94.59 321.0 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.075

Sweep:

SWEEP1

Files:

/programs/datagrid/163/79D_1_12_###.img

Images:

1 - 902

Beam:

(158.1, 156.5) -> (158.1, 156.97)

Distance:

330.0 -> 331.57

Spacegroup:

P 61 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.55 6.92 2.55
Low resolution limit 50.53 50.54 2.59
Completeness 97.2 100.0 69.9
Multiplicity 8.7 9.2 1.9
I/sigma 16.8 42.2 0.5
Rmerge 0.065 0.028 1.853
CC half 0.999 1.0 0.358
Anomalous completeness 92.5 100.0 38.4
Anomalous multiplicity 4.9 4.9 4.9
Cell 94.588 94.588 320.952 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.