HADDOCK docking models

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Data DOI: 10.15785/SBGRID/131 | ID: 131

Bonvin Laboratory, Utrecht University

Release Date: 26 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/131

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/131 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/131 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/131 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/131 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 131 ; shasum -c files.sha'

Storage requirements: 54G

Biological Sample:

HADDOCK docking models

Dataset Type:

Structural Model

Subject Composition:

Protein

Collection Facility:

NA

Data Creation Date:

4 Jan 2015

Related Datasets:

None


Cite this Dataset

Vangone, A; Bonvin, AMJJ. 2015. "HADDOCK docking models.", SBGrid Data Bank, V1, http://dx.doi.org/10.15785/SBGRID/131.

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Dataset Description

HADDOCK decoys for 55 new entries in Docking Benchmark 5

Project Members

Name Additional Roles Affiliation While Working on the Project
Anna VangoneData CollectorUtrecht University
Alexandre MJJ BonvinData Collector, Depositor, PIUtrecht University

Reprocessing Instructions

The set contains decoys (PDB models) with associated HADDOCK scores, i-RMSD, l-RMSD, Fnat and input parameters for 55 complexes for the three stages of HADDOCK (rigid-body, semi-flexible refinement and water refinement)


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.