Data DOI: 10.15785/SBGRID/131 | ID: 131
Bonvin Laboratory, Utrecht University
Release Date: 26 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/131
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/131 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/131 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/131 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/131 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 131 ; shasum -c files.sha'
Storage requirements: 54G
Biological Sample:
HADDOCK docking models
Dataset Type:
Structural Model
Subject Composition:
Protein
Collection Facility:
NA
Data Creation Date:
4 Jan 2015
Related Datasets:
None
Vangone, A; Bonvin, AMJJ. 2015. "HADDOCK docking models.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/131.
HADDOCK decoys for 55 new entries in Docking Benchmark 5
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Anna Vangone | Data Collector | Utrecht University |
| Alexandre MJJ Bonvin | Data Collector, Depositor, PI | Utrecht University |
The set contains decoys (PDB models) with associated HADDOCK scores, i-RMSD, l-RMSD, Fnat and input parameters for 55 complexes for the three stages of HADDOCK (rigid-body, semi-flexible refinement and water refinement)
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.