X-Ray Diffraction data from HSV-2 gH/gL complex, source of 3M1C structure

Data DOI: 10.15785/SBGRID/123 | ID: 123

Publication DOI: 10.1038/nsmb.1837

3M1C Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Heldwein Laboratory, Tufts University School of Medicine

Release Date: 21 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/123

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/123 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/123 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/123 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/123 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 123 ; shasum -c files.sha'

Storage requirements: 3.9G

Biological Sample:

HSV-2 gH/gL complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BNL X25

Data Creation Date:

26 Jul 2009

Related Datasets:

121


Cite this Dataset

Chowdary, TK; Heldwein, EE. 2015. "X-Ray Diffraction data for: HSV-2 gH/gL complex. PDB Code 3M1C", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/123.

Download Citation

Dataset Description

This is a selenomethionine single-wavelength anomalous diffraction data set collected at 0.9789 angstrom wavelength

Project Members

Name Additional Roles Affiliation While Working on the Project
Tirumala K ChowdaryData CollectorTufts University School of Medicine
Ekaterina E HeldweinDepositor, PITufts University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/123/TKC201_5_###.img

Images:

1 - 219

Beam:

(158.0, 158.0) -> (158.0, 157.83)

Distance:

500.0 -> 494.7

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.82 7.65 2.82
Low resolution limit 88.21 88.25 2.87
Completeness 100.0 100.0 97.4
Multiplicity 14.9 14.7 7.4
I/sigma 11.4 31.6 1.2
Rmerge 0.275 0.062 1.922
CC half 0.991 0.999 0.412
Anomalous completeness 99.8 100.0 97.8
Anomalous multiplicity 8.1 8.1 8.1
Cell 88.211 88.211 332.29 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/123/TKC201_5_###.img

Images:

1 - 219

Beam:

(158.0, 158.0) -> (158.0, 157.8)

Distance:

500.0 -> 494.93

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.83 7.68 2.83
Low resolution limit 55.46 55.47 2.88
Completeness 100.0 100.0 98.7
Multiplicity 15.2 14.7 7.6
I/sigma 13.4 44.7 0.9
Rmerge 0.222 0.043 2.196
CC half 0.997 0.999 0.366
Anomalous completeness 99.8 100.0 98.6
Anomalous multiplicity 8.3 8.3 8.3
Cell 88.31 88.31 332.78 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/123/TKC201_5_###.img

Images:

1 - 219

Beam:

(158.0, 158.0) -> (158.0, 157.8)

Distance:

500.0 -> 495.04

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.85 7.73 2.85
Low resolution limit 61.37 61.39 2.9
Completeness 100.0 100.0 99.5
Multiplicity 15.4 14.7 7.9
I/sigma 13.6 44.8 0.9
Rmerge 0.221 0.043 2.295
CC half 0.997 0.999 0.264
Anomalous completeness 99.8 100.0 98.5
Anomalous multiplicity 8.4 8.4 8.4
Cell 88.31 88.31 332.78 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9789

Sweep:

SWEEP1

Files:

/programs/datagrid/123/TKC201_5_###.img

Images:

1 - 219

Beam:

(158.0, 158.0) -> (158.0, 157.8)

Distance:

500.0 -> 495.49

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.83 7.67 2.83
Low resolution limit 62.69 62.7 2.88
Completeness 100.0 100.0 95.9
Multiplicity 15.0 14.9 7.3
I/sigma 10.5 29.2 0.9
Rmerge 0.25 0.054 2.664
CC half 0.994 0.998 0.329
Anomalous completeness 99.7 100.0 96.2
Anomalous multiplicity 8.2 8.2 8.2
Cell 88.656 88.656 333.926 90.0 90.0 90.0
This dataset is part of the SBDB Pilot Reference Collection, and has processed intensities available from that collection.

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.