X-Ray Diffraction data from HSV-2 gH/gL complex, source of 3M1C structure

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Data DOI: 10.15785/SBGRID/121 | ID: 121

Publication DOI: 10.1038/nsmb.1837

3M1C Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Heldwein Laboratory, Tufts University School of Medicine

Release Date: 21 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/121

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/121 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/121 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/121 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/121 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 121 ; shasum -c files.sha'

Storage requirements: 2.6G

Biological Sample:

HSV-2 gH/gL complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

5 Mar 2009

Related Datasets:

123


Cite this Dataset

Chowdary, TK; Heldwein, EE. 2015. "X-Ray Diffraction data for: HSV-2 gH/gL complex. PDB Code 3M1C", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/121.

Download Citation

Dataset Description

Native data set collected at 0.97949 angstrom

Project Members

Name Additional Roles Affiliation While Working on the Project
Tirumala K ChowdaryData CollectorTufts University School of Medicine
Ekaterina E HeldweinDepositor, PITufts University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//121/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//121/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//121/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/121/tkc72_2_1_###.img

Images:

2 - 120

Beam:

(156.3, 156.0) -> (156.3, 156.4)

Distance:

380.0 -> 376.42

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.04 1.86
Low resolution limit 45.41 45.43 1.89
Completeness 63.7 93.1 1.7
Multiplicity 2.5 2.9 1.1
I/sigma 2.8 16.8 0.1
Rmerge 1.482 0.139 -1.571
CC half 0.138 0.849 -0.039
Anomalous completeness 47.5 82.2 0.2
Anomalous multiplicity 1.5 1.5 1.5
Cell 88.049 87.894 332.25 90.0 89.998 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.