Data DOI: 10.15785/SBGRID/12 | ID: 12
Publication DOI: 10.7554/eLife.03239
4TVS Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Schwartz Laboratory, Massachusetts Institute of Technology
Release Date: 27 Apr 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/12
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/12 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/12 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/12 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/12 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 12 ; shasum -c files.sha'
Storage requirements: 8.4G
Biological Sample:
LAP1(aa356-583), H.sapiens, bound to VHH-BS1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24 IDC
Data Creation Date:
18 Jun 2010
Related Datasets:
None
Schwartz, TU. 2015. "X-Ray Diffraction data for: LAP1(aa356-583), H.sapiens, bound to VHH-BS1. PDB Code 4TVS", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/12.
native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Thomas U Schwartz | Data Collector, Depositor | MIT, Biology |
| Thomas Schwartz | PI | Massachusetts Institute of Technology |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2538
Sweep:
SWEEP1
Files:
/programs/datagrid/12/bs167_355_ta16_1_####.cbf
Images:
1 - 1440
Beam:
(216.79, 220.95) -> (216.79, 220.98)
Distance:
200.0 -> 202.98
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.43 | 6.59 | 2.43 |
| Low resolution limit | 65.86 | 65.88 | 2.47 |
| Completeness | 95.4 | 96.3 | 94.5 |
| Multiplicity | 3.5 | 3.6 | 3.4 |
| I/sigma | 1.6 | 2.1 | 1.0 |
| Rmerge | 0.469 | 0.291 | 0.684 |
| CC half | 0.559 | 0.708 | 0.262 |
| Anomalous completeness | 89.4 | 92.1 | 87.6 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 69.53 | 73.66 | 85.54 | 89.78 | 71.29 | 89.94 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2538
Sweep:
SWEEP1
Files:
/programs/datagrid/12/bs167_355_ta16_1_####.cbf
Images:
1 - 1440
Beam:
(216.79, 220.95) -> (216.79, 220.96)
Distance:
200.0 -> 200.04
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.3 | 3.52 | 1.3 |
| Low resolution limit | 83.01 | 83.19 | 1.32 |
| Completeness | 67.1 | 98.7 | 0.8 |
| Multiplicity | 5.3 | 5.1 | 1.0 |
| I/sigma | 0.5 | 1.7 | 0.1 |
| Rmerge | 0.642 | 0.493 | 0.504 |
| CC half | 0.689 | 0.622 | -1.0 |
| Anomalous completeness | 60.9 | 86.7 | 0.0 |
| Anomalous multiplicity | 2.8 | 2.8 | 2.8 |
| Cell | 69.88 | 74.14 | 87.73 | 90.0 | 108.87 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.2538
Sweep:
SWEEP1
Files:
/programs/datagrid/12/bs167_355_ta16_1_####.cbf
Images:
1 - 1440
Beam:
(216.79, 220.95) -> (216.79, 221.0)
Distance:
200.0 -> 199.33
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.53 | 4.17 | 1.53 |
| Low resolution limit | 73.95 | 74.03 | 1.56 |
| Completeness | 97.9 | 99.1 | 91.4 |
| Multiplicity | 6.6 | 6.9 | 5.5 |
| I/sigma | 2.6 | 21.0 | 0.0 |
| Rmerge | 0.161 | 0.085 | 3.653 |
| CC half | 0.993 | 0.994 | 0.169 |
| Anomalous completeness | 96.6 | 98.5 | 85.9 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 69.742 | 73.946 | 85.373 | 90.0 | 108.807 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
