X-Ray Diffraction data from LAP1(aa356-583), H.sapiens, bound to VHH-BS1, source of 4TVS structure

Data DOI: 10.15785/SBGRID/12 | ID: 12

Publication DOI: 10.7554/eLife.03239

4TVS Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Schwartz Laboratory, Massachusetts Institute of Technology

Release Date: April 27, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/12

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/12 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/12 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/12 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/12 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 12 ; shasum -c files.sha'

Storage requirements: 8.4G

Biological Sample:

LAP1(aa356-583), H.sapiens, bound to VHH-BS1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS 24 IDC

Data Creation Date:

June 18, 2010

Related Datasets:

None


Cite this Dataset

Schwartz, TU. 2015. "X-Ray Diffraction data for: LAP1(aa356-583), H.sapiens, bound to VHH-BS1. PDB Code 4TVS", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/12.

Download Citation

Dataset Description

native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Thomas U SchwartzData Collector, DepositorMIT, Biology
Thomas SchwartzPIMassachusetts Institute of Technology

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2538

Sweep:

SWEEP1

Files:

/programs/datagrid/12/bs167_355_ta16_1_####.cbf

Images:

1 - 1440

Beam:

(216.79, 220.95) -> (216.79, 221.08)

Distance:

200.0 -> 200.47

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.6 4.34 1.6
Low resolution limit 73.99 74.07 1.63
Completeness 96.8 97.4 95.7
Multiplicity 6.1 6.4 6.0
I/sigma 6.1 14.4 1.2
Rmerge 0.144 0.096 1.885
CC half 0.992 0.992 0.569
Anomalous completeness 93.8 95.2 92.4
Anomalous multiplicity 3.1 3.1 3.1
Cell 69.774 73.988 85.466 90.0 108.784 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2538

Sweep:

SWEEP1

Files:

/programs/datagrid/12/bs167_355_ta16_1_####.cbf

Images:

1 - 1440

Beam:

(216.79, 220.95) -> (216.79, 220.96)

Distance:

200.0 -> 200.71

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.53 6.86 2.53
Low resolution limit 41.36 41.36 2.57
Completeness 99.4 99.9 99.5
Multiplicity 5.9 5.1 6.1
I/sigma 1.4 1.3 0.9
Rmerge 0.492 0.299 0.764
CC half 0.708 0.876 0.674
Anomalous completeness 94.6 88.4 98.8
Anomalous multiplicity 3.1 3.1 3.1
Cell 70.02 74.34 87.53 90.0 109.09 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2538

Sweep:

SWEEP1

Files:

/programs/datagrid/12/bs167_355_ta16_1_####.cbf

Images:

1 - 1440

Beam:

(216.79, 220.95) -> (216.79, 220.96)

Distance:

200.0 -> 199.98

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.89 2.54
Low resolution limit 82.53 82.57 2.58
Completeness 99.2 99.5 99.5
Multiplicity 5.9 5.1 6.2
I/sigma 1.3 1.1 1.0
Rmerge 0.509 0.296 0.754
CC half 0.698 0.881 0.56
Anomalous completeness 94.3 87.2 98.8
Anomalous multiplicity 3.1 3.1 3.1
Cell 70.08 74.39 87.33 90.0 109.09 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2538

Sweep:

SWEEP1

Files:

/programs/datagrid/12/bs167_355_ta16_1_####.cbf

Images:

1 - 1440

Beam:

(216.79, 220.95) -> (216.79, 220.94)

Distance:

200.0 -> 200.0

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.65 4.48 1.65
Low resolution limit 66.14 66.19 1.68
Completeness 98.1 98.5 96.6
Multiplicity 6.4 6.7 6.3
I/sigma 6.8 15.9 1.0
Rmerge 0.115 0.076 1.49
CC half 0.994 0.994 0.804
Anomalous completeness 96.6 97.7 95.1
Anomalous multiplicity 3.3 3.3 3.3
Cell 69.866 74.095 85.53 90.0 108.807 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.