Data DOI: 10.15785/SBGRID/116 | ID: 116
Publication DOI: 10.1073/pnas.1116887109
3T0Y Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Crosson Laboratory, University of Chicago
Release Date: 19 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/116
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/116 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/116 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/116 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/116 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 116 ; shasum -c files.sha'
Storage requirements: 3.6G
Biological Sample:
Caulobacter PhyR sigma-like domain in complex with NepR
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
LS-CAT. 21-ID-D
Data Creation Date:
24 Nov 2010
Related Datasets:
None
Herrou, J; Crosson, S. 2015. "X-Ray Diffraction data for: Caulobacter PhyR sigma-like domain in complex with NepR. PDB Code 3T0Y", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/116.
native dataset of PhyR-SL/NepR complex
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Julien Herrou | Data Collector | University of Chicago |
| Sean Crosson | Data Collector, Depositor, PI | University of Chicago |
Diffraction images were reduced using HKL 2000 suite; crystal was assigned to space group C2221. Cell dimensions a = 75.4 Å, b = 105.3 Å, and c = 97.9 Å. Diffraction from these crystals was moderately anisotropic (Dmin = 2.1 Å along b* and c* and 2.7 Å along a*, where Dmin is the diffraction limit of the crystal). The reflection set was ellipsoidally truncated and anisotropically scaled before refinement.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/116/cryst1.###
Images:
6 - 200
Beam:
(111.39, 111.97) -> (111.39, 111.86)
Distance:
180.0 -> 179.86
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.91 | 5.18 | 1.91 |
| Low resolution limit | 52.47 | 52.49 | 1.94 |
| Completeness | 99.3 | 99.9 | 98.9 |
| Multiplicity | 7.9 | 7.1 | 8.0 |
| I/sigma | 10.0 | 44.3 | 0.4 |
| Rmerge | 0.091 | 0.028 | 5.231 |
| CC half | 0.999 | 0.998 | 0.508 |
| Anomalous completeness | 99.0 | 99.2 | 97.9 |
| Anomalous multiplicity | 4.2 | 4.2 | 4.2 |
| Cell | 76.86 | 105.19 | 98.24 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/116/cryst1.###
Images:
6 - 200
Beam:
(111.39, 111.97) -> (111.39, 111.86)
Distance:
180.0 -> 179.89
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.91 | 5.18 | 1.91 |
| Low resolution limit | 62.06 | 62.09 | 1.94 |
| Completeness | 99.3 | 99.9 | 98.9 |
| Multiplicity | 7.9 | 7.1 | 8.0 |
| I/sigma | 10.1 | 44.4 | 0.4 |
| Rmerge | 0.091 | 0.028 | 5.261 |
| CC half | 0.999 | 0.997 | 0.509 |
| Anomalous completeness | 98.9 | 99.2 | 98.0 |
| Anomalous multiplicity | 4.2 | 4.2 | 4.2 |
| Cell | 76.86 | 105.19 | 98.24 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/116/cryst1.###
Images:
6 - 200
Beam:
(111.39, 111.97) -> (111.39, 111.92)
Distance:
180.0 -> 180.61
Spacegroup:
C 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.81 | 4.9 | 1.81 |
| Low resolution limit | 98.91 | 99.06 | 1.84 |
| Completeness | 99.7 | 100.0 | 98.7 |
| Multiplicity | 8.1 | 7.6 | 8.0 |
| I/sigma | 6.7 | 47.5 | 0.0 |
| Rmerge | 0.127 | 0.045 | -12.199 |
| CC half | 0.964 | 0.901 | 0.516 |
| Anomalous completeness | 99.6 | 100.0 | 98.3 |
| Anomalous multiplicity | 4.2 | 4.2 | 4.2 |
| Cell | 77.411 | 105.922 | 98.914 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
