Limited Operations 2024/02/27 7AM ET - 10AM ET

The SBDB will be operating at a reduced level between 7AM and 10AM 2024/02/27 due to underlying system maintance. New dataset registrations, dataset depositions, downloads of published datasets from HMS, deposition credential requests, and other inquiries will be unavailable during this maintance.

X-Ray Diffraction data from T-box ribozyme-tRNA complex, source of 4LCK structure

Data DOI: 10.15785/SBGRID/112 | ID: 112

Publication DOI: 10.1038/nature12440

4LCK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ferré-D'Amaré Laboratory, National Institutes of Health

Release Date: May 19, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/112

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/112 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/112 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/112 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/112 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 112 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

T-box ribozyme-tRNA complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

APS 24-ID-E

Data Creation Date:

Aug. 2, 2012

Related Datasets:

None


Cite this Dataset

Ferré-D'Amaré, AR. 2015. "X-Ray Diffraction data for: T-box ribozyme-tRNA complex. PDB Code 4LCK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/112.

Download Citation

Dataset Description

Diffraction dataset for T-box ribozyme-tRNA complex

Project Members

Name Additional Roles Affiliation While Working on the Project
Adrian R Ferré-D'AmaréData Collector, Depositor, PINational Institutes of Health

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/112/jz833_1_###.img

Images:

1 - 150

Beam:

(155.57, 160.4) -> (155.57, 158.87)

Distance:

500.0 -> 498.18

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.16 8.57 3.16
Low resolution limit 54.23 54.24 3.21
Completeness 99.5 93.4 99.9
Multiplicity 6.0 5.4 5.3
I/sigma 13.2 41.8 0.6
Rmerge 0.06 0.023 2.45
CC half 0.997 0.996 0.248
Anomalous completeness 97.9 87.0 96.9
Anomalous multiplicity 3.2 3.2 3.2
Cell 100.36 108.46 266.94 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/112/jz833_1_###.img

Images:

1 - 150

Beam:

(155.57, 160.4) -> (155.57, 158.87)

Distance:

500.0 -> 499.97

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.18 8.62 3.18
Low resolution limit 56.74 56.75 3.23
Completeness 99.5 93.3 100.0
Multiplicity 6.0 5.4 5.4
I/sigma 13.4 42.0 0.8
Rmerge 0.059 0.023 2.026
CC half 0.997 0.995 0.335
Anomalous completeness 97.9 86.7 97.6
Anomalous multiplicity 3.2 3.2 3.2
Cell 100.36 108.46 266.93 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.