X-Ray Diffraction data from 'Spinach' RNA-chromophore complex, source of 4TS0 structure

Data DOI: 10.15785/SBGRID/111 | ID: 111

Publication DOI: 10.1038/nsmb.2865

4TS0 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ferré-D'Amaré Laboratory, National Institutes of Health

Release Date: May 19, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/111

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/111 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/111 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/111 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/111 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 111 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

'Spinach' RNA-chromophore complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

ALS 5.0.2

Data Creation Date:

Aug. 16, 2013

Related Datasets:

None


Cite this Dataset

Ferré-D'Amaré, AR. 2015. "X-Ray Diffraction data for: 'Spinach' RNA-chromophore complex. PDB Code 4TS0", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/111.

Download Citation

Dataset Description

Diffraction dataset for 'Spinach' RNA-chromophore complex

Project Members

Name Additional Roles Affiliation While Working on the Project
Adrian R Ferré-D'AmaréData Collector, Depositor, PINational Institutes of Health

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54981

Sweep:

SWEEP1

Files:

/programs/datagrid/111/kd467c2a_5_###.img

Images:

1 - 360

Beam:

(153.5, 161.9) -> (153.5, 161.91)

Distance:

250.0 -> 250.29

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.65 7.19 2.65
Low resolution limit 62.12 62.14 2.7
Completeness 100.0 100.0 100.0
Multiplicity 12.8 11.9 8.4
I/sigma 22.3 54.3 0.9
Rmerge 0.064 0.029 2.349
CC half 1.0 1.0 0.417
Anomalous completeness 100.0 99.5 99.6
Anomalous multiplicity 7.0 7.0 7.0
Cell 39.759 49.521 186.368 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54981

Sweep:

SWEEP1

Files:

/programs/datagrid/111/kd467c2a_5_###.img

Images:

1 - 360

Beam:

(153.5, 161.9) -> (153.5, 161.9)

Distance:

250.0 -> 250.5

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.71 7.34 2.71
Low resolution limit 39.79 39.79 2.76
Completeness 99.5 100.0 99.8
Multiplicity 13.5 11.9 10.1
I/sigma 32.6 79.2 1.0
Rmerge 0.046 0.018 2.037
CC half 1.0 1.0 0.389
Anomalous completeness 99.0 99.4 99.8
Anomalous multiplicity 7.4 7.4 7.4
Cell 39.79 49.57 186.47 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54981

Sweep:

SWEEP1

Files:

/programs/datagrid/111/kd467c2a_5_###.img

Images:

1 - 360

Beam:

(153.5, 161.9) -> (153.5, 161.92)

Distance:

250.0 -> 250.49

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.69 7.3 2.69
Low resolution limit 62.16 62.17 2.74
Completeness 99.5 100.0 99.8
Multiplicity 13.4 11.9 9.6
I/sigma 31.9 78.8 0.9
Rmerge 0.047 0.018 2.108
CC half 1.0 1.0 0.451
Anomalous completeness 99.0 99.5 99.6
Anomalous multiplicity 7.4 7.4 7.4
Cell 39.79 49.57 186.47 90.0 90.0 90.0

Version:

version unreported

Reprocessing failed.

This dataset is part of the SBDB Pilot Reference Collection, and has processed intensities available from that collection.

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.