Limited Operations 2024/02/27 7AM ET - 10AM ET

The SBDB will be operating at a reduced level between 7AM and 10AM 2024/02/27 due to underlying system maintance. New dataset registrations, dataset depositions, downloads of published datasets from HMS, deposition credential requests, and other inquiries will be unavailable during this maintance.

X-Ray Diffraction data from Pseudomonas aeruginosa CifR_C99T-C107T-C181R complexed with 26bp dsDNA operator, source of 6NSM structure

Data DOI: 10.15785/SBGRID/1075 | ID: 1075

Publication DOI: https://doi.org/10.1101/2024.01.16.572601

6NSM Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Madden Laboratory, Dartmouth Geisel School of Medicine

Release Date: Jan. 26, 2024

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/1075

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/1075 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/1075 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/1075 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/1075 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 1075 ; shasum -c files.sha'

Storage requirements: 31G

Biological Sample:

Pseudomonas aeruginosa CifR_C99T-C107T-C181R complexed with 26bp dsDNA operator

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA, Protein

Collection Facility:

NSLS-II 17-ID-2

Data Creation Date:

June 5, 2018

Related Datasets:

None


Cite this Dataset

He, S; Madden, D. 2024. "X-Ray Diffraction data for: Pseudomonas aeruginosa CifR_C99T-C107T-C181R complexed with 26bp dsDNA operator. PDB Code 6NSM", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/1075.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Susu HeData Collector, DepositorDartmouth
Dean MaddenDartmouth
Dean R MaddenPIDartmouth Geisel School of Medicine

Reprocessing Instructions

The ASU should be composed of one CifR dimer complex with dsDNA and one apo CifR monomer which forms a dimer with a symmetry mate, according to a SeMet dataset (6NSR). Only the model of CifR dimer complexed with dsDNA was refined since the electron density of the apo-CifR is too weak for building the model.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.