native dataset
Data DOI: 10.15785/SBGRID/1217 | PDB ID 8UPA: RCSB PDBe | Publication DOI: 10.1038/s41467-024-50919-4 | Published: 19 Sep 2025
Garcia Laboratory, Stanford University
native datasets
Data DOI: 10.15785/SBGRID/1180 | PDB ID 6NDZ: RCSB PDBe | Publication DOI: https://doi.org/10.1038/s41594-019-0224-z | Published: 11 Jul 2025
Garcia Laboratory, Stanford University
native data
Data DOI: 10.15785/SBGRID/1177 | PDB ID 9H6N: RCSB PDBe | Published: 27 Jun 2025
Niemann Laboratory, Bielefeld University
data with anomalous signal from bromine
Data DOI: 10.15785/SBGRID/1176 | PDB ID 9H6M: RCSB PDBe | Published: 27 Jun 2025
Niemann Laboratory, Bielefeld University
X-Ray Diffraction data for c-Src SH3 domain
Data DOI: 10.15785/SBGRID/1158 | PDB ID 9OFX: RCSB PDBe | Published: 2 May 2025
Boggon Laboratory, Yale University School of Medicine
Zinc anomalous SAD dataset
Data DOI: 10.15785/SBGRID/1156 | PDB ID 9MYP: RCSB PDBe | Published: 18 Aug 2025
Corbett Laboratory, University of California, San Diego
The set of all AlphaFold multimer (AF-M) v2.3 pairwise structure predictions accompanying the publication: Predictomes: A classifier-curated database of AlphaFold-modeled protein-protein interactions. This dataset includes prediction pairs used for training random forest classifiers including SPOC, pairs used for 30 ranking experiments, all pairs that belong to the genome maintenance matrix on predictomes.org, and three proteome wide in-silico interaction screens conducted with human DONSON, human STK19, and human USP37. All pairs were generated with ColabFold v1.5.2. All our predictions used AF-M multimer version 3 weights models 1, 2, and 4 with 3 recycles, templates enabled, 1 ensemble, no dropout, and no AMBER relaxation. The Multiple Sequence Alignments (MSAs) (unpaired + paired) supplied to AF-M were generated by the MMSeqs2 server using default settings. Sequences run were generally capped at 3,600 amino acids total to avoid memory exhaustion on GPUs.
Data DOI: 10.15785/SBGRID/1155 | Published: 4 Feb 2025
Walter Laboratory, Harvard Medical School
Zinc SAD dataset
Data DOI: 10.15785/SBGRID/1153 | PDB ID 9MUG: RCSB PDBe | Published: 18 Aug 2025
Corbett Laboratory, University of California, San Diego
native dataset
Data DOI: 10.15785/SBGRID/1151 | PDB ID 9MIN: RCSB PDBe | Published: 23 Sep 2025
Garcia Laboratory, Stanford University
native dataset
Data DOI: 10.15785/SBGRID/1148 | PDB ID 9E2T: RCSB PDBe | Published: 26 Sep 2025
Garcia Laboratory, Stanford University
X-ray diffraction images
Data DOI: 10.15785/SBGRID/1147 | PDB ID 9MQ5: RCSB PDBe | Published: 1 Aug 2025
Boggon Laboratory, Yale University School of Medicine
native dataset
Data DOI: 10.15785/SBGRID/1145 | PDB ID 9EAV: RCSB PDBe | Published: 12 Sep 2025
Corbett Laboratory, University of California, San Diego
native dataset
Data DOI: 10.15785/SBGRID/1144 | PDB ID 9EAE: RCSB PDBe | Published: 12 Sep 2025
Corbett Laboratory, University of California, San Diego
native dataset
Data DOI: 10.15785/SBGRID/1143 | PDB ID 9EA8: RCSB PDBe | Published: 12 Sep 2025
Corbett Laboratory, University of California, San Diego
Native dataset
Data DOI: 10.15785/SBGRID/1142 | PDB ID 9EA5: RCSB PDBe | Published: 12 Sep 2025
Corbett Laboratory, University of California, San Diego
Native dataset
Data DOI: 10.15785/SBGRID/1141 | PDB ID 9EA4: RCSB PDBe | Published: 12 Sep 2025
Corbett Laboratory, University of California, San Diego
Antibody-antigen models for the paper "Towards the accurate modelling of antibody-antigen complexes from sequence using machine learning and information-driven docking". M Giulini, C Schneider, D Cutting, N Desai, C Deane, AMJJ Bonvin. Bioinformatics. 2024
Data DOI: 10.15785/SBGRID/1139 | Published: 16 Feb 2025
Bonvin Laboratory, Utrecht University
Protein-glycan docking models obtained with HADDOCK corresponding to the protocols described in: A Ranaudo, M Giulini, A Pelissou Ayuso, AMJJ Bonvin. Modelling Protein-Glycan Interactions with HADDOCK. Journal of Chemical Information and Modeling (2024)
Data DOI: 10.15785/SBGRID/1138 | Published: 12 Feb 2025
Bonvin Laboratory, Utrecht University
Crystal structure of human polymerase eta with incoming threofuranosyl thymine nucleoside triphosphate (tTTP) opposite DNA template dA
Data DOI: 10.15785/SBGRID/1128 | PDB ID 9CIQ: RCSB PDBe | Published: 13 Sep 2024
Stone Laboratory, Vanderbilt University
Crystal structure of human polymerase eta with incoming dCMPnPP nucleotide opposite O4-methyl threofuranosyl thymidine in DNA template at extension stage
Data DOI: 10.15785/SBGRID/1127 | PDB ID 9CIH: RCSB PDBe | Published: 13 Sep 2024
Stone Laboratory, Vanderbilt University