Data DOI: 10.15785/SBGRID/992 | ID: 992
7PDO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Pereira Laboratory, IBMC/i3S, Universidade do Porto
Release Date: 24 Feb 2023
1. If this dataset is locally available, it should be accessable at /programs/datagrid/992
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/992 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/992 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/992 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/992 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 992 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Mycobacterial glucosyl-3-phosphoglycerate synthase
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
ESRF ID29
Data Creation Date:
20 Jun 2013
Related Datasets:
None
Pereira, PJB. 2023. "X-Ray Diffraction data for: Mycobacterial glucosyl-3-phosphoglycerate synthase. PDB Code 7PDO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/992.
X-Ray Diffraction data from M. hassiacum GpgS, source of 7PDO structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Pedro JB Pereira | Data Collector, Depositor | IBMC - Instituto de Biologia Molecular e Celular |
| Pedro Pereira | PI | Universidade do Porto |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96112
Sweep:
SWEEP1
Files:
/programs/datagrid/992/ab1275_2_####.cbf
Images:
1 - 1800
Beam:
(215.71, 210.44) -> (215.71, 210.89)
Distance:
346.46 -> 344.0
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.85 | 1.79 |
| Low resolution limit | 28.17 | 28.17 | 1.82 |
| Completeness | 99.9 | 100.0 | 100.0 |
| Multiplicity | 6.6 | 7.0 | 5.4 |
| I/sigma | 12.0 | 46.5 | 0.3 |
| Rmerge | 0.056 | 0.029 | 2.995 |
| CC half | 0.999 | 0.999 | 0.392 |
| Anomalous completeness | 98.5 | 99.7 | 94.1 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 101.33 | 101.33 | 122.55 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96112
Sweep:
SWEEP1
Files:
/programs/datagrid/992/ab1275_2_####.cbf
Images:
1 - 1800
Beam:
(215.71, 210.44) -> (215.71, 210.9)
Distance:
346.46 -> 344.93
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.79 | 4.86 | 1.79 |
| Low resolution limit | 78.09 | 78.17 | 1.82 |
| Completeness | 99.9 | 100.0 | 100.0 |
| Multiplicity | 6.6 | 7.0 | 5.4 |
| I/sigma | 12.0 | 46.6 | 0.3 |
| Rmerge | 0.056 | 0.029 | 2.975 |
| CC half | 0.999 | 0.999 | 0.396 |
| Anomalous completeness | 98.5 | 99.7 | 94.1 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 101.33 | 101.33 | 122.55 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96112
Sweep:
SWEEP1
Files:
/programs/datagrid/992/ab1275_2_####.cbf
Images:
1 - 1800
Beam:
(215.71, 210.44) -> (215.71, 210.9)
Distance:
346.46 -> 345.22
Spacegroup:
I 41
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.69 | 1.73 |
| Low resolution limit | 78.07 | 78.15 | 1.76 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 6.4 | 7.0 | 5.0 |
| I/sigma | 13.3 | 78.8 | 0.2 |
| Rmerge | 0.06 | 0.026 | 3.69 |
| CC half | 0.995 | 0.989 | 0.362 |
| Anomalous completeness | 98.1 | 100.0 | 87.4 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 101.304 | 101.304 | 122.51 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
