X-Ray Diffraction data from InlB392_T332E (Listeria monocytogenes InlB (internalin B), residues 36-392; T332E mutation)), source of 7PV8 structure

Data DOI: 10.15785/SBGRID/983 | ID: 983

Publication DOI: 10.1107/S2059798322000432

7PV8 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Niemann Laboratory, Bielefeld University

Release Date: 17 Jan 2023

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/983

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/983 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/983 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/983 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/983 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 983 ; shasum -c files.sha'

Storage requirements: 8.4G

Biological Sample:

InlB392_T332E (Listeria monocytogenes InlB (internalin B), residues 36-392; T332E mutation))

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline BL14.2, BESSY II, Helmholtz-Zentrum Berlin fuer Materialien und Energie

Data Creation Date:

18 Jan 2018

Related Datasets:

None


Cite this Dataset

Widmann, C; Niemann, HH. 2023. "X-Ray Diffraction data for: InlB392_T332E (Listeria monocytogenes InlB (internalin B), residues 36-392; T332E mutation)). PDB Code 7PV8", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/983.

Download Citation

Dataset Description

native data

Project Members

Name Additional Roles Affiliation While Working on the Project
Hartmut H NiemannData Collector, DepositorBielefeld University, Department of Chemistry
Christiane WidmannData CollectorBielefeld University, Department of Chemistry
Hartmut NiemannPIBielefeld University

Reprocessing Instructions

XDS.INP input file used for processing is provided as template.

Processing Bundle

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9184

Sweep:

SWEEP1

Files:

/programs/datagrid/983/nh179_4_1_####.cbf

Images:

1 - 3600

Beam:

(144.48, 127.45) -> (144.48, 126.65)

Distance:

253.3 -> 250.91

Spacegroup:

P 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.07 5.59 2.07
Low resolution limit 22.77 22.77 2.11
Completeness 99.9 99.8 100.0
Multiplicity 12.1 9.2 13.3
I/sigma 3.5 5.6 0.7
Rmerge 0.385 0.3 3.204
CC half 0.956 0.954 0.352
Anomalous completeness 99.9 98.6 100.0
Anomalous multiplicity 6.5 6.5 6.5
Cell 44.34 54.3 225.68 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9184

Sweep:

SWEEP1

Files:

/programs/datagrid/983/nh179_4_1_####.cbf

Images:

1 - 3600

Beam:

(144.48, 127.45) -> (144.48, 128.16)

Distance:

253.3 -> 250.88

Spacegroup:

P 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.01 5.45 2.01
Low resolution limit 29.28 29.29 2.04
Completeness 100.0 99.8 100.0
Multiplicity 12.2 9.0 13.4
I/sigma 3.3 5.4 0.7
Rmerge 0.401 0.311 3.002
CC half 0.977 0.961 0.303
Anomalous completeness 99.9 98.9 99.9
Anomalous multiplicity 6.5 6.5 6.5
Cell 44.27 54.2 112.62 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9184

Sweep:

SWEEP1

Files:

/programs/datagrid/983/nh179_4_1_####.cbf

Images:

1 - 3600

Beam:

(144.48, 127.45) -> (144.48, 127.6)

Distance:

253.3 -> 250.87

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.82 4.93 1.82
Low resolution limit 29.32 29.32 1.85
Completeness 99.9 100.0 97.7
Multiplicity 13.1 11.7 12.9
I/sigma 8.4 46.3 0.1
Rmerge 0.149 0.047 6.602
CC half 0.999 0.988 0.232
Anomalous completeness 99.8 99.5 97.9
Anomalous multiplicity 7.0 7.0 7.0
Cell 44.319 54.283 225.4 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.