X-Ray Diffraction data from ZNF93 KRAB domain in complex with KAP1, source of 7Z36 structure

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Data DOI: 10.15785/SBGRID/880 | ID: 880

Publication DOI: 10.15252/embj.2022111179

7Z36 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Modis Laboratory, University of Cambridge

Release Date: 21 Oct 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/880

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/880 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/880 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/880 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/880 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 880 ; shasum -c files.sha'

Storage requirements: 5.0G

Biological Sample:

ZNF93 KRAB domain in complex with KAP1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Diamond Light Source, beamline i04

Data Creation Date:

20 Apr 2021

Related Datasets:

None


Cite this Dataset

Stoll, GA; Modis, Y. 2022. "X-Ray Diffraction data for: ZNF93 KRAB domain in complex with KAP1. PDB Code 7Z36", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/880.

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Dataset Description

Native dataset. Phased by molecular replacement with PDB 6QAJ.

Project Members

Name Additional Roles Affiliation While Working on the Project
Guido A StollData CollectorUniversity of Cambridge
Yorgo ModisDepositor, PIUniversity of Cambridge

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//880/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//880/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//880/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9795

Sweep:

SWEEP1

Files:

/programs/datagrid/880/2_8_1_master.h5

Images:

1 - 705

Beam:

(166.29, 159.51) -> (166.29, 159.55)

Distance:

295.88 -> 295.41

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.5 6.78 2.5
Low resolution limit 63.79 63.81 2.54
Completeness 97.2 96.1 93.2
Multiplicity 2.8 2.8 2.7
I/sigma 7.8 54.2 0.3
Rmerge 0.072 0.023 1.144
CC half 0.987 0.979 0.278
Anomalous completeness 83.6 88.0 72.3
Anomalous multiplicity 1.6 1.6 1.6
Cell 190.268 68.578 149.099 90.0 114.047 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.