Data DOI: 10.15785/SBGRID/843 | ID: 843
Xue Laboratory, Radboud University Medical Center
Release Date: 28 Oct 2021
1. If this dataset is locally available, it should be accessable at /programs/datagrid/843
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/843 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/843 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/843 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/843 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 843 ; shasum -c files.sha'
Biological Sample:
Protein-protein structures
Dataset Type:
Structural Model
Subject Composition:
Protein
Collection Facility:
N/A
Data Creation Date:
13 Jul 2021
Related Datasets:
None
Marzella, DF; Ambrosetti, F; Bonvin, AMJJ; Geng, C; Georgievska, S; Renaud, N; Ridder, L; Xue, LC. 2021. "Protein-protein structures.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/843.
HADDOCK refined 3D structures from multiple datasets (BM5, MANY, DC, CAPRI), used for experiments in the DeepRank paper. 1.Renaud, N. et al. DeepRank: A deep learning framework for data mining 3D protein-protein interfaces. bioRxiv 2021.01.29.425727 (2021) doi:10.1101/2021.01.29.425727.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Dario F Marzella | Depositor | Center for Molecular and Biomolecular Informatics, Radboud University Medical Center, Nijmegen, The Netherlands |
| Francesco Ambrosetti | Faculty of Science - Chemistry, Bijvoet Centre, Utrecht University, Utrecht, The Netherlands | |
| Alexandre MJJ Bonvin | Faculty of Science - Chemistry, Bijvoet Centre, Utrecht University, Utrecht, The Netherlands | |
| Cunliang Geng | Data Collector | Netherlands eScience Center, Amsterdam, The Netherlands |
| Sonja Georgievska | Netherlands eScience Center, Amsterdam, The Netherlands | |
| Nicolas Renaud | Data Collector | Netherlands eScience Center, Amsterdam, The Netherlands |
| Lars Ridder | Netherlands eScience Center, Amsterdam, The Netherlands | |
| Li C Xue | Data Collector | Center for Molecular and Biomolecular Informatics, Radboud University Medical Center, Nijmegen, The Netherlands |
| Li Xue | PI | Radboud University Medical Center |
none
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.