Data DOI: 10.15785/SBGRID/825 | ID: 825
Chain Laboratory, University College London
Release Date: 21 May 2021
1. If this dataset is locally available, it should be accessable at /programs/datagrid/825
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/825 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/825 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/825 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/825 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 825 ; shasum -c files.sha'
Storage requirements: 17G
Biological Sample:
Dataset of TCR-pMHC docked models
Dataset Type:
Structural Model
Subject Composition:
Protein
Collection Facility:
University College London
Data Creation Date:
1 Jan 2021
Related Datasets:
None
Peacock, T; Chain, B. 2021. "Dataset of TCR-pMHC docked models.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/825.
This dataset comprises bound TCR-pMHC models for 44 TCR docking benchmark cases. These models were produced using four docking platforms - ClusPro, HADDOCK, LightDock and ZDOCK - as a comparative study of docking software performance in the context of TCR-pMHC modelling. Each docking case was provided to the software platforms along with varying levels of detail about the binding interface in the form of four docking scenarios, to assess how effectively each platform made use of this additional information to improve modeling accuracy. A manuscript reporting these results has been submitted for publication.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Thomas Peacock | Data Collector, Depositor | University College London |
| Benny Chain | University College London | |
| Benny Chain | PI | University College London |
none
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.