Data DOI: 10.15785/SBGRID/786 | ID: 786
6WZQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 15 May 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/786
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/786 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/786 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/786 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/786 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 786 ; shasum -c files.sha'
Storage requirements: 31G
Biological Sample:
SARS-CoV-2 Nucleocapsid N2b domain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-E
Data Creation Date:
12 May 2020
Related Datasets:
None
Ye, Q; Corbett, KD. 2020. "X-Ray Diffraction data for: SARS-CoV-2 Nucleocapsid N2b domain. PDB Code 6WZQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/786.
Native dataset for SARS-CoV-2 Nucleocapsid (N) dimerization domain, P21 form
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Qiaozhen Ye | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
Process to 1.45 A
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/786/10_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.88, 154.75) -> (164.88, 154.58)
Distance:
160.0 -> 160.7
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.29 | 3.5 | 1.29 |
| Low resolution limit | 37.54 | 37.56 | 1.31 |
| Completeness | 90.8 | 90.7 | 87.2 |
| Multiplicity | 3.7 | 3.5 | 3.8 |
| I/sigma | 8.1 | 21.2 | 0.8 |
| Rmerge | 0.054 | 0.041 | 1.613 |
| CC half | 0.996 | 0.992 | 0.298 |
| Anomalous completeness | 84.8 | 77.0 | 84.6 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 43.56 | 71.16 | 74.26 | 94.86 | 90.02 | 90.01 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/786/10_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.88, 154.75) -> (164.88, 154.57)
Distance:
160.0 -> 160.52
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.25 | 3.39 | 1.25 |
| Low resolution limit | 70.89 | 71.01 | 1.27 |
| Completeness | 99.0 | 98.6 | 96.4 |
| Multiplicity | 6.7 | 6.4 | 5.8 |
| I/sigma | 10.3 | 30.0 | 0.8 |
| Rmerge | 0.063 | 0.045 | 2.397 |
| CC half | 0.999 | 0.997 | 0.337 |
| Anomalous completeness | 98.1 | 96.9 | 94.1 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 71.15 | 43.55 | 74.24 | 90.0 | 94.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/786/10_1_1_######.cbf
Images:
1 - 1800
Beam:
(164.88, 154.75) -> (164.88, 154.57)
Distance:
160.0 -> 160.67
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.21 | 3.29 | 1.21 |
| Low resolution limit | 70.95 | 71.07 | 1.23 |
| Completeness | 97.4 | 99.4 | 77.2 |
| Multiplicity | 6.7 | 6.7 | 4.8 |
| I/sigma | 6.3 | 47.4 | 0.1 |
| Rmerge | 0.072 | 0.049 | 3.471 |
| CC half | 0.997 | 0.995 | 0.246 |
| Anomalous completeness | 97.0 | 99.6 | 75.7 |
| Anomalous multiplicity | 3.4 | 3.4 | 3.4 |
| Cell | 71.207 | 43.573 | 74.25 | 90.0 | 94.85 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
