Data DOI: 10.15785/SBGRID/778 | ID: 778
Publication DOI: 10.1038/S41467-022-32577-6
5MGR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 13 May 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/778
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/778 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/778 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/778 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/778 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 778 ; shasum -c files.sha'
Storage requirements: 42G
Biological Sample:
Human receptor NKR-P1 in glycosylated form, extracellular domain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Diamond beam line I03
Data Creation Date:
7 May 2015
Related Datasets:
None
Skalova, T; Blaha, J; Harlos, K; Hasek, J; Koval, T; Stransky, J; Vanek, O; Yuguang, Z; Dohnalek, J. 2022. "X-Ray Diffraction data for: Human receptor NKR-P1 in glycosylated form, extracellular domain. PDB Code 5MGR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/778.
native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Jan Blaha | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Karl Harlos | Data Collector | Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, OX3 7BN Oxford, United Kingdom |
| Jindrich Hasek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Tomas Koval | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Jan Stransky | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Ondrej Vanek | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Zhao Yuguang | Data Collector | Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, OX3 7BN Oxford, United Kingdom |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
used all images 1-7200
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/778/565101-C12-x1_2_####.cbf
Images:
1 - 7200
Beam:
(208.26, 215.7) -> (208.26, 215.73)
Distance:
340.05 -> 340.89
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.58 | 4.29 | 1.58 |
| Low resolution limit | 53.82 | 53.85 | 1.61 |
| Completeness | 99.9 | 100.0 | 97.0 |
| Multiplicity | 35.0 | 35.5 | 16.5 |
| I/sigma | 30.6 | 96.0 | 0.6 |
| Rmerge | 0.057 | 0.037 | 3.25 |
| CC half | 1.0 | 1.0 | 0.28 |
| Anomalous completeness | 99.7 | 100.0 | 95.9 |
| Anomalous multiplicity | 18.4 | 18.4 | 18.4 |
| Cell | 68.51 | 68.51 | 127.85 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/778/565101-C12-x1_2_####.cbf
Images:
1 - 7200
Beam:
(208.26, 215.7) -> (208.26, 215.73)
Distance:
340.05 -> 342.13
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.59 | 4.32 | 1.59 |
| Low resolution limit | 53.82 | 53.85 | 1.62 |
| Completeness | 100.0 | 100.0 | 97.9 |
| Multiplicity | 35.4 | 35.5 | 17.3 |
| I/sigma | 31.1 | 96.0 | 0.7 |
| Rmerge | 0.057 | 0.037 | 2.926 |
| CC half | 1.0 | 1.0 | 0.35 |
| Anomalous completeness | 99.8 | 100.0 | 97.3 |
| Anomalous multiplicity | 18.6 | 18.6 | 18.6 |
| Cell | 68.51 | 68.51 | 127.85 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97625
Sweep:
SWEEP1
Files:
/programs/datagrid/778/565101-C12-x1_2_####.cbf
Images:
1 - 7200
Beam:
(208.26, 215.7) -> (208.26, 215.73)
Distance:
340.05 -> 341.53
Spacegroup:
P 31 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.51 | 4.1 | 1.51 |
| Low resolution limit | 127.68 | 128.13 | 1.54 |
| Completeness | 98.8 | 100.0 | 87.4 |
| Multiplicity | 32.5 | 36.9 | 11.9 |
| I/sigma | 23.9 | 109.8 | 0.3 |
| Rmerge | 0.064 | 0.041 | 2.585 |
| CC half | 1.0 | 1.0 | 0.342 |
| Anomalous completeness | 98.2 | 100.0 | 83.5 |
| Anomalous multiplicity | 17.1 | 17.1 | 17.1 |
| Cell | 68.421 | 68.421 | 127.675 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
