Data DOI: 10.15785/SBGRID/713 | ID: 713
Publication DOI: 10.4049/jimmunol.1200880
3RS1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 27 Sep 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/713
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/713 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/713 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/713 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/713 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 713 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Mouse Clr-g, a ligand for NK Cell activation receptor NKR-P1F
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Bessy 14.1
Data Creation Date:
12 May 2010
Related Datasets:
None
Skalova, T; Duskova, J; Hasek, J; Koval, T; Vanek, O; Dohnalek, J. 2019. "X-Ray Diffraction data for: Mouse Clr-g, a ligand for NK Cell activation receptor NKR-P1F. PDB Code 3RS1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/713.
X-ray data of mouse Clr-g, source of 3RS1 structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 16206 Praha 6, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 16206 Praha 6, Czech Republic |
| Jarmila Duskova | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 16206 Praha 6, Czech Republic |
| Jindrich Hasek | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 16206 Praha 6, Czech Republic |
| Tomas Koval | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 16206 Praha 6, Czech Republic |
| Ondrej Vanek | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, 12840 Praha 2, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/713/mclrg14go_1_###.img
Images:
1 - 580
Beam:
(112.87, 112.87) -> (112.87, 112.01)
Distance:
197.71 -> 198.82
Spacegroup:
P 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.6 | 4.34 | 1.6 |
| Low resolution limit | 27.28 | 27.28 | 1.63 |
| Completeness | 90.6 | 92.3 | 57.5 |
| Multiplicity | 5.4 | 5.6 | 3.7 |
| I/sigma | 11.8 | 35.9 | 0.9 |
| Rmerge | 0.085 | 0.028 | 1.166 |
| CC half | 0.998 | 0.999 | 0.352 |
| Anomalous completeness | 84.7 | 85.3 | 50.7 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 32.38 | 61.46 | 118.46 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/713/mclrg14go_1_###.img
Images:
1 - 580
Beam:
(112.87, 112.87) -> (112.87, 112.0)
Distance:
197.71 -> 198.67
Spacegroup:
P 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.6 | 4.34 | 1.6 |
| Low resolution limit | 42.65 | 42.66 | 1.63 |
| Completeness | 90.8 | 92.3 | 57.5 |
| Multiplicity | 5.5 | 5.6 | 3.7 |
| I/sigma | 11.9 | 35.5 | 0.9 |
| Rmerge | 0.083 | 0.029 | 1.173 |
| CC half | 0.999 | 0.999 | 0.349 |
| Anomalous completeness | 85.0 | 85.7 | 50.7 |
| Anomalous multiplicity | 3.0 | 3.0 | 3.0 |
| Cell | 32.38 | 61.46 | 118.46 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/713/mclrg14go_1_###.img
Images:
1 - 580
Beam:
(112.87, 112.87) -> (112.87, 112.08)
Distance:
197.71 -> 199.08
Spacegroup:
P 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.77 | 4.8 | 1.77 |
| Low resolution limit | 118.54 | 118.81 | 1.8 |
| Completeness | 97.8 | 92.6 | 94.1 |
| Multiplicity | 5.4 | 5.7 | 4.8 |
| I/sigma | 19.8 | 21.7 | 24.7 |
| Rmerge | 0.126 | 0.057 | 0.057 |
| CC half | 0.482 | 0.995 | 0.365 |
| Anomalous completeness | 94.4 | 89.0 | 87.2 |
| Anomalous multiplicity | 2.9 | 2.9 | 2.9 |
| Cell | 32.414 | 61.447 | 118.54 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
