X-Ray Diffraction data from p120RasGAP N-terminal SH2 domain with p190RhoGAP pTyr-1105 peptide, source of 6PXC structure

dataset logo thumbnail
Visualize in 3D >>

Data DOI: 10.15785/SBGRID/699 | ID: 699

Publication DOI: 10.1371/journal.pone.0226113

6PXC Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 17 Dec 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/699

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/699 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/699 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/699 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/699 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 699 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

p120RasGAP N-terminal SH2 domain with p190RhoGAP pTyr-1105 peptide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS NE-CAT-E 24-ID-E

Data Creation Date:

6 Jun 2019

Related Datasets:

None


Cite this Dataset

Jaber Chehayeb, R; Stiegler, AL; Boggon, TJ. 2019. "X-Ray Diffraction data for: p120RasGAP N-terminal SH2 domain with p190RhoGAP pTyr-1105 peptide. PDB Code 6PXC", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/699.

Download Citation

Dataset Description

Native data. 3 passes.

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Rachel Jaber ChehayebData CollectorYale University
Amy L StieglerData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//699/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//699/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//699/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP3

Files:

/programs/datagrid/699/TJB6_1_Rachel_3_1_####.cbf

Images:

1 - 540

Beam:

(217.22, 225.15) -> (217.22, 225.18)

Distance:

270.0 -> 272.26

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.47 3.99 1.47
Low resolution limit 39.52 39.54 1.49
Completeness 99.7 100.0 92.9
Multiplicity 17.5 17.7 14.1
I/sigma 5.6 41.1 0.1
Rmerge 0.145 0.078 41.847
CC half 0.998 0.997 0.637
Anomalous completeness 99.6 100.0 93.1
Anomalous multiplicity 9.2 9.2 9.2
Cell 44.293 65.168 87.553 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.