X-Ray Diffraction data from Chicken egg white lysozyme, source of 6RT9 structure

dataset logo thumbnail
Visualize in 3D >>

Data DOI: 10.15785/SBGRID/657 | ID: 657

Publication DOI: 10.1039/D0CP02469D

6RT9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: 24 May 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/657

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/657 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/657 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/657 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/657 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 657 ; shasum -c files.sha'

Storage requirements: 166M

Biological Sample:

Chicken egg white lysozyme

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

In-house data

Data Creation Date:

19 Dec 2017

Related Datasets:

None


Cite this Dataset

Pereira, PJB. 2019. "X-Ray Diffraction data for: Chicken egg white lysozyme. PDB Code 6RT9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/657.

Download Citation

Dataset Description

Orthorhombic crystals grown with 300g/L sucrose

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro JB PereiraData Collector, DepositorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

XDS.INP templates are provided for all data wedges.

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//657/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//657/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//657/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.