Data DOI: 10.15785/SBGRID/638 | ID: 638
Publication DOI: 0.1038/s41594-019-0224-z
6NDZ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 24 May 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/638
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/638 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/638 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/638 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/638 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 638 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Designed repeat binding protein with Frizzled-8 CRD
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
ALS beamline 8.2.1
Data Creation Date:
15 Sep 2016
Related Datasets:
None
Jude, KM; Garcia, KC; Miao, Y; Garcia, K. 2019. "X-Ray Diffraction data for: Designed repeat binding protein with Frizzled-8 CRD. PDB Code 6NDZ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/638.
Merged datasets for structure solution by MR
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Depositor | Stanford University, HHMI |
| K C Garcia | Stanford University, HHMI | |
| Yi Miao | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
Merged C13 and C15 datasets
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97964
Sweep:
SWEEP2
Files:
/programs/datagrid/638/C15_1_#####.img
Images:
1 - 220
Beam:
(147.1, 156.0) -> (147.1, 155.65)
Distance:
350.0 -> 348.95
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.2 | 5.97 | 2.2 |
| Low resolution limit | 65.93 | 65.96 | 2.24 |
| Completeness | 94.2 | 99.8 | 75.4 |
| Multiplicity | 4.8 | 5.5 | 2.1 |
| I/sigma | 5.4 | 12.8 | 0.8 |
| Rmerge | 0.127 | 0.074 | 0.951 |
| CC half | 0.994 | 0.997 | 0.311 |
| Anomalous completeness | 86.1 | 97.6 | 49.0 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 109.48 | 80.49 | 114.95 | 90.0 | 90.14 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97964
Sweep:
SWEEP2
Files:
/programs/datagrid/638/C15_1_#####.img
Images:
1 - 220
Beam:
(147.1, 156.0) -> (147.1, 155.66)
Distance:
350.0 -> 349.68
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.2 | 5.97 | 2.2 |
| Low resolution limit | 65.93 | 65.96 | 2.24 |
| Completeness | 94.2 | 99.8 | 75.4 |
| Multiplicity | 4.8 | 5.5 | 2.1 |
| I/sigma | 5.5 | 13.3 | 0.8 |
| Rmerge | 0.126 | 0.074 | 0.953 |
| CC half | 0.995 | 0.996 | 0.305 |
| Anomalous completeness | 86.0 | 97.5 | 49.0 |
| Anomalous multiplicity | 2.6 | 2.6 | 2.6 |
| Cell | 109.48 | 80.49 | 114.95 | 90.0 | 90.14 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97964
Sweep:
SWEEP2
Files:
/programs/datagrid/638/C15_1_#####.img
Images:
1 - 220
Beam:
(147.1, 156.0) -> (147.1, 155.66)
Distance:
350.0 -> 348.54
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.19 | 5.94 | 2.19 |
| Low resolution limit | 115.15 | 115.31 | 2.23 |
| Completeness | 98.4 | 100.0 | 81.0 |
| Multiplicity | 10.6 | 10.9 | 6.3 |
| I/sigma | 3.8 | 26.7 | 0.1 |
| Rmerge | 0.2 | 0.092 | -6.098 |
| CC half | 0.996 | 0.997 | 0.377 |
| Anomalous completeness | 97.6 | 100.0 | 73.9 |
| Anomalous multiplicity | 5.6 | 5.6 | 5.6 |
| Cell | 80.439 | 109.267 | 115.152 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
