Data DOI: 10.15785/SBGRID/601 | ID: 601
6EF9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 4 Jan 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/601
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/601 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/601 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/601 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/601 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 601 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
GspB Siglec domain
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Advanced Photon Source 21-ID-G
Data Creation Date:
7 Nov 2017
Related Datasets:
None
Loukachevitch, L; Iverson, T. 2022. "X-Ray Diffraction data for: GspB Siglec domain. PDB Code 6EF9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/601.
Isolated Siglec domain of GspB crystallized in 4 M formate
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tina Iverson | Depositor | Vanderbilt |
| Lioudmila Loukachevitch | Data Collector | Vanderbilt |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/601/gspbs_cr1.###
Images:
1 - 360
Beam:
(145.21, 155.63) -> (145.21, 155.64)
Distance:
170.0 -> 169.98
Spacegroup:
H 3 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.21 | 3.28 | 1.21 |
| Low resolution limit | 32.8 | 32.81 | 1.23 |
| Completeness | 98.1 | 100.0 | 84.5 |
| Multiplicity | 18.1 | 20.6 | 5.9 |
| I/sigma | 22.4 | 67.5 | 0.8 |
| Rmerge | 0.061 | 0.034 | 1.884 |
| CC half | 1.0 | 0.999 | 0.282 |
| Anomalous completeness | 97.4 | 99.9 | 78.4 |
| Anomalous multiplicity | 9.4 | 9.4 | 9.4 |
| Cell | 92.03 | 92.03 | 143.95 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/601/gspbs_cr1.###
Images:
1 - 360
Beam:
(145.21, 155.63) -> (145.21, 155.64)
Distance:
170.0 -> 170.06
Spacegroup:
H 3 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.21 | 3.28 | 1.21 |
| Low resolution limit | 47.98 | 48.02 | 1.23 |
| Completeness | 98.1 | 99.9 | 84.5 |
| Multiplicity | 18.1 | 20.6 | 5.9 |
| I/sigma | 22.4 | 67.4 | 0.8 |
| Rmerge | 0.061 | 0.034 | 1.882 |
| CC half | 0.999 | 0.999 | 0.282 |
| Anomalous completeness | 97.4 | 99.9 | 78.4 |
| Anomalous multiplicity | 9.4 | 9.4 | 9.4 |
| Cell | 92.03 | 92.03 | 143.95 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97856
Sweep:
SWEEP1
Files:
/programs/datagrid/601/gspbs_cr1.###
Images:
1 - 360
Beam:
(145.21, 155.63) -> (145.21, 155.73)
Distance:
170.0 -> 170.47
Spacegroup:
R 3 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.27 | 3.44 | 1.27 |
| Low resolution limit | 53.5 | 53.55 | 1.29 |
| Completeness | 99.5 | 100.0 | 94.6 |
| Multiplicity | 18.6 | 21.6 | 8.4 |
| I/sigma | 13.3 | 56.9 | 17.7 |
| Rmerge | 0.163 | 0.047 | 0.216 |
| CC half | 0.99 | 0.994 | 0.075 |
| Anomalous completeness | 99.4 | 100.0 | 92.0 |
| Anomalous multiplicity | 9.6 | 9.6 | 9.6 |
| Cell | 92.119 | 92.119 | 144.23 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
