X-Ray Diffraction data from Methyltransferase, source of structure

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Data DOI: 10.15785/SBGRID/599 | ID: 599

Publication DOI: 10.1073/pnas.1813450116

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: 11 Jan 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/599

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/599 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/599 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/599 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/599 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 599 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Methyltransferase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SOLEIL PX2A

Data Creation Date:

10 Dec 2016

Related Datasets:

None


Cite this Dataset

Ripoll-Rozada, J; Pereira, PJB. 2019. "X-Ray Diffraction data for: Methyltransferase.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/599.

Download Citation

Dataset Description

X-Ray Diffraction data from M. hassiacum MeT1. P3121 low resolution native.

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro JB PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Jorge Ripoll-RozadaData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//599/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//599/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//599/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.98008

Sweep:

SWEEP1

Files:

/programs/datagrid/599/BM1401_1_master.h5

Images:

1 - 3600

Beam:

(126.04, 115.59) -> (126.04, 115.72)

Distance:

367.26 -> 367.5

Spacegroup:

P 31 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.17 8.61 3.17
Low resolution limit 105.06 105.12 3.23
Completeness 99.8 100.0 93.6
Multiplicity 20.7 19.2 21.5
I/sigma 7.9 50.1 0.6
Rmerge 0.371 0.062 8.57
CC half 0.996 0.995 0.419
Anomalous completeness 99.7 100.0 93.7
Anomalous multiplicity 10.9 10.9 10.9
Cell 121.318 121.318 160.515 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.