X-Ray Diffraction data from Crystal structure of integrin-linked kinase ankyrin repeat domain in complex with PINCH1 LIM1 domain, source of 3F6Q structure

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Data DOI: 10.15785/SBGRID/554 | ID: 554

Publication DOI: 10.1073/pnas.0811415106

3F6Q Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: 26 Jan 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/554

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/554 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/554 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/554 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/554 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 554 ; shasum -c files.sha'

Storage requirements: 4.1G

Biological Sample:

Crystal structure of integrin-linked kinase ankyrin repeat domain in complex with PINCH1 LIM1 domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Rigaku MicroMax-007, Cu Ka, R-AXIS IV++

Data Creation Date:

9 Jun 2008

Related Datasets:

None


Cite this Dataset

Boggon, TJ. 2018. "X-Ray Diffraction data for: Crystal structure of integrin-linked kinase ankyrin repeat domain in complex with PINCH1 LIM1 domain. PDB Code 3F6Q", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/554.

Download Citation

Dataset Description

Iodide soak

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonData Collector, Depositor, PIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//554/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//554/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//554/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.5418

Sweep:

SWEEP2

Files:

/programs/datagrid/554/I#####.osc

Images:

40337 - 40359

Beam:

(146.82, 149.32) -> (146.82, 149.4)

Distance:

-86.0 -> -85.96

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 34.6 34.61 1.54
Completeness 90.2 98.7 60.4
Multiplicity 2.6 2.6 2.4
I/sigma 5.6 7.9 2.2
Rmerge 0.676 0.112 0.98
CC half 0.007 0.976 -0.03
Anomalous completeness 84.1 97.0 45.9
Anomalous multiplicity 1.4 1.4 1.4
Cell 37.076 41.595 46.609 78.064 68.925 85.819

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.