X-Ray Diffraction data from Engineered IL-13 bound to receptor, source of 5E4E structure

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Data DOI: 10.15785/SBGRID/516 | ID: 516

Publication DOI: 10.1126/scisignal.aab2677

5E4E Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 7 Nov 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/516

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/516 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/516 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/516 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/516 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 516 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

Engineered IL-13 bound to receptor

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS 5.0.2

Data Creation Date:

21 Oct 2011

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Moraga, I; Garcia, K. 2017. "X-Ray Diffraction data for: Engineered IL-13 bound to receptor. PDB Code 5E4E", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/516.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorHoward Hughes Medical Institute
K C GarciaStanford University
Ignacio MoragaData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

Data were processed with HKL2000

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//516/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//516/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//516/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0

Sweep:

SWEEP1

Files:

/programs/datagrid/516/Ter3_3_###.img

Images:

1 - 120

Beam:

(157.1, 161.1) -> (157.1, 161.19)

Distance:

450.0 -> 452.63

Spacegroup:

P 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.65 7.21 2.65
Low resolution limit 186.81 187.27 2.7
Completeness 89.4 100.0 49.5
Multiplicity 4.8 4.4 4.1
I/sigma 6.2 32.1 -0.1
Rmerge 0.134 0.039 -5.464
CC half 0.994 0.999 0.347
Anomalous completeness 88.8 99.9 48.8
Anomalous multiplicity 2.6 2.6 2.6
Cell 62.62 69.34 186.81 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.