X-Ray Diffraction data from Putative PIN domain (VapC4 toxin component), source of 5H4G structure

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Data DOI: 10.15785/SBGRID/389 | ID: 389

5H4G Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Murthy Laboratory, Indian Institute of Science

Release Date: 18 Nov 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/389

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/389 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/389 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/389 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/389 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 389 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

Putative PIN domain (VapC4 toxin component)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF BM14

Data Creation Date:

14 Mar 2011

Related Datasets:

None


Cite this Dataset

Hatti, K; Biswas, A; K, S; Murthy, M. 2016. "X-Ray Diffraction data for: Putative PIN domain (VapC4 toxin component). PDB Code 5H4G", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/389.

Download Citation

Dataset Description

Native VapC4 dataset at 1.77 A

Project Members

Name Additional Roles Affiliation While Working on the Project
Kaushik HattiDepositorMolecular Biophysics Unit, IISc
Ansuman BiswasData CollectorProf. Sekar's lab, CDS, IISc
Sekar KCDS, IISc
M.R.N. MurthyPIIndian Institute of Science

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//389/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//389/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//389/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97625

Sweep:

SWEEP1

Files:

/programs/datagrid/389/P1X8-3-TTHA0117-dc_1_###.mccd

Images:

114 - 123

Beam:

(113.59, 112.06) -> (113.59, 113.57)

Distance:

182.03 -> 182.16

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 33.64 33.65 1.81
Completeness 21.3 20.2 18.3
Multiplicity 1.0 1.1 1.0
I/sigma 28.8 42.1 44.0
Rmerge 0.183 0.011 0.095
CC half 0.671 0.635 0.223
Anomalous completeness 0.1 1.1 0.1
Anomalous multiplicity 1.0 1.0 1.0
Cell 50.976 44.707 52.505 90.0 103.408 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.