Data DOI: 10.15785/SBGRID/381 | ID: 381
Publication DOI: 10.7554/eLife.20930
5T9T Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shapiro Laboratory, Columbia University
Release Date: 1 Nov 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/381
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/381 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/381 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/381 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/381 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 381 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
Mouse Protocadherin Gamma B2 extracellular cadherin domains 1-5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24-ID-E
Data Creation Date:
17 Aug 2016
Related Datasets:
None
Goodman, KM ; Shapiro, L. 2016. "X-Ray Diffraction data for: Mouse Protocadherin Gamma B2 extracellular cadherin domains 1-5. PDB Code 5T9T", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/381.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kerry M Goodman | Data Collector, Depositor | Columbia University |
| Larry Shapiro | PI | Columbia University |
none
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/381/gB2SH012_1_###.img
Images:
1 - 180
Beam:
(148.83, 158.64) -> (148.83, 158.76)
Distance:
500.0 -> 501.26
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.51 | 9.52 | 3.51 |
| Low resolution limit | 69.13 | 69.14 | 3.57 |
| Completeness | 99.7 | 97.8 | 99.9 |
| Multiplicity | 3.7 | 3.4 | 3.6 |
| I/sigma | 4.8 | 17.7 | 1.0 |
| Rmerge | 0.262 | 0.046 | 1.555 |
| CC half | 0.984 | 0.997 | 0.317 |
| Anomalous completeness | 93.4 | 85.6 | 93.0 |
| Anomalous multiplicity | 1.9 | 1.9 | 1.9 |
| Cell | 80.62 | 118.0 | 98.05 | 90.0 | 103.86 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/381/gB2SH012_1_###.img
Images:
1 - 180
Beam:
(148.83, 158.64) -> (148.83, 158.75)
Distance:
500.0 -> 506.5
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.79 | 10.29 | 3.79 |
| Low resolution limit | 119.53 | 119.59 | 3.86 |
| Completeness | 99.3 | 98.3 | 98.3 |
| Multiplicity | 3.4 | 3.5 | 3.4 |
| I/sigma | 1.2 | 6.2 | 0.9 |
| Rmerge | 0.909 | 0.681 | 1.069 |
| CC half | 0.015 | 0.405 | 0.038 |
| Anomalous completeness | 91.1 | 94.4 | 88.1 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 81.683 | 119.527 | 99.26 | 90.0 | 103.797 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
