Data DOI: 10.15785/SBGRID/325 | ID: 325
Publication DOI: 10.7554/eLife.18449
5K8R Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gaudet Laboratory, Harvard University
Release Date: 29 Jul 2016
1. If this dataset is locally available, it should be accessable at /programs/datagrid/325
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/325 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/325 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/325 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/325 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 325 ; shasum -c files.sha'
Storage requirements: 3.2G
Biological Sample:
human PcdhgB3 EC1-4
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
24-ID-E, NE-CAT, APS, Chicago, IL
Data Creation Date:
19 Nov 2015
Related Datasets:
None
Nicoludis, JM; Gaudet, R. 2016. "X-Ray Diffraction data for: human PcdhgB3 EC1-4. PDB Code 5K8R", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/325.
Native data
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| John M Nicoludis | Data Collector, Depositor | Graduate Student |
| Rachelle Gaudet | PI | Harvard University |
Molecular replacement required iterative searches of individual extracellular cadherin repeat domains from PDB ID 4zi9
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/325/RG002_02_1_###.img
Images:
1 - 180
Beam:
(150.51, 158.82) -> (150.51, 158.84)
Distance:
350.0 -> 347.96
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.41 | 6.54 | 2.41 |
| Low resolution limit | 47.32 | 47.33 | 2.45 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 7.2 | 6.5 | 7.1 |
| I/sigma | 13.4 | 48.7 | 0.7 |
| Rmerge | 0.137 | 0.024 | 2.686 |
| CC half | 0.998 | 1.0 | 0.315 |
| Anomalous completeness | 99.6 | 99.4 | 99.5 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 128.85 | 161.25 | 53.62 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9792
Sweep:
SWEEP1
Files:
/programs/datagrid/325/RG002_02_1_###.img
Images:
1 - 180
Beam:
(150.51, 158.82) -> (150.51, 158.82)
Distance:
350.0 -> 348.55
Spacegroup:
C 2 2 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.41 | 6.54 | 2.41 |
| Low resolution limit | 100.66 | 100.75 | 2.45 |
| Completeness | 100.0 | 99.8 | 100.0 |
| Multiplicity | 7.2 | 6.4 | 7.1 |
| I/sigma | 13.4 | 48.6 | 0.7 |
| Rmerge | 0.137 | 0.024 | 2.68 |
| CC half | 0.998 | 1.0 | 0.313 |
| Anomalous completeness | 99.6 | 99.5 | 99.5 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 128.85 | 161.25 | 53.62 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
