Data DOI: 10.15785/SBGRID/286 | ID: 286
Publication DOI: 10.1038/nmeth.4178
5k7p Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gonen Laboratory, University of California, Los Angeles
Release Date: 31 Mar 2017
1. If this dataset is locally available, it should be accessable at /programs/datagrid/286
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/286 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/286 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/286 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/286 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 286 ; shasum -c files.sha'
Storage requirements: 4.6G
Biological Sample:
Xylanase
Dataset Type:
Microcrystal Electron Diffraction
Subject Composition:
Protein
Collection Facility:
FEI TF20 (Janelia Research Campus)
Data Creation Date:
15 Apr 2015
Related Datasets:
None
Hattne, J; de la Cruz, J; Gonen, T. 2017. "Microcrystal Electron Diffraction data for: Xylanase. PDB Code 5k7p", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/286.
Micro-electron diffraction data from xylanase
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Johan Hattne | Depositor | HHMI Janelia Research Campus |
| Jason de la Cruz | Data Collector | HHMI Janelia Research Campus |
| Tamir Gonen | PI | University of California, Los Angeles |
Convert corrected images to SMV: $ img2px -d 3240 -s 11 -o sq_06_02/xyl_###.img movie1-75m4s-2+_sq06_02_00?.tvips $ img2px -d 3240 -s 11 -o sq_08_02/xyl_###.img movie1-75m4s-2+_sq08_02_00?.tvips $ img2px -d 3240 -s 10 -o sq_09_01/xyl_###.img movie1-75m4s-2+_sq09_01_00?.tvips $ img2px -d 3240 -s 10 -o sq_10_02/xyl_###.img movie1-75m4s-2+_sq10_02_00?.tvips MOSFLM processing parameters: DATASET ADC offset GAIN Direction of spindle rotation movie1-75m4s-2+_sq06_02 37 5 Forward movie1-75m4s-2+_sq08_02 38 5 Forward movie1-75m4s-2+_sq09_01 39 5 Backward movie1-75m4s-2+_sq10_02 39 5 Backward
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
