X-Ray Diffraction data from S. cerevisiae Hrr25:Mam1 complex, source of 5CZO structure

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Data DOI: 10.15785/SBGRID/196 | ID: 196

Publication DOI: 10.15252/embj.201694082

5CZO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Corbett Laboratory, University of California, San Diego

Release Date: 9 Aug 2016

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/196

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/196 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/196 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/196 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/196 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 196 ; shasum -c files.sha'

Storage requirements: 6.4G

Biological Sample:

S. cerevisiae Hrr25:Mam1 complex

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Advanced Light Source BL 12.3.1

Data Creation Date:

14 May 2015

Related Datasets:

None


Cite this Dataset

Ye, Q; Corbett, KD. 2016. "X-Ray Diffraction data for: S. cerevisiae Hrr25:Mam1 complex. PDB Code 5CZO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/196.

Download Citation

Dataset Description

Native dataset for Hrr25:Mam1 complex, form 2

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin D CorbettDepositorUC San Diego & Ludwig Institute for Cancer Research
Qiaozhen YeData CollectorUC San Diego & Ludwig Institute for Cancer Research
Kevin CorbettPIUniversity of California, San Diego

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d mosflm_beam_centre=154.28,156.38 /programs/datagrid//196/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii mosflm_beam_centre=154.28,156.38 /programs/datagrid//196/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials mosflm_beam_centre=154.28,156.38 /programs/datagrid//196/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.28291

Sweep:

SWEEP1

Files:

/programs/datagrid/196/QY_rG3_1_#####.img

Images:

1 - 360

Beam:

(154.28, 156.38) -> (154.28, 156.34)

Distance:

300.0 -> 299.41

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.54 6.88 2.54
Low resolution limit 70.52 70.54 2.58
Completeness 99.5 100.0 92.1
Multiplicity 7.3 7.3 5.1
I/sigma 8.6 49.3 0.1
Rmerge 0.144 0.033 7.108
CC half 0.997 0.999 0.264
Anomalous completeness 99.5 100.0 91.8
Anomalous multiplicity 3.7 3.7 3.7
Cell 52.489 83.465 131.941 90.0 92.588 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.