Data DOI: 10.15785/SBGRID/119 | ID: 119
Publication DOI: 10.1371/journal.ppat.1003549
4K6M Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Gong Laboratory, Chinese Academy of Science, Wuhan Branch
Release Date: 26 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/119
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/119 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/119 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/119 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/119 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 119 ; shasum -c files.sha'
Storage requirements: 4.8G
Biological Sample:
Japanese encephalitis virus NS5
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline BL17U1, SSRF, Shanghai, China
Data Creation Date:
29 Oct 2012
Related Datasets:
None
Gong, P. 2015. "X-Ray Diffraction data for: Japanese encephalitis virus NS5. PDB Code 4K6M", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/119.
native dataset of the full-length Japanese encephalitis virus NS5 crystal
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Peng Gong | Data Collector, Depositor | State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, Hubei, China |
| Peng Gong | PI | Chinese Academy of Science, Wuhan Branch |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9793
Sweep:
SWEEP1
Files:
/programs/datagrid/119/lu010_3_###.img
Images:
1 - 270
Beam:
(156.8, 154.1) -> (156.8, 153.98)
Distance:
280.0 -> 296.15
Spacegroup:
P 2 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.48 | 4.02 | 1.48 |
| Low resolution limit | 94.24 | 94.43 | 1.5 |
| Completeness | 41.7 | 89.8 | 0.2 |
| Multiplicity | 2.3 | 3.2 | 1.0 |
| I/sigma | 0.0 | 0.2 | 0.2 |
| Rmerge | 1.419 | 1.09 | 0.0 |
| CC half | 0.212 | 0.204 | 0.0 |
| Anomalous completeness | 25.4 | 79.8 | 0.0 |
| Anomalous multiplicity | 1.5 | 1.5 | 1.5 |
| Cell | 199.4 | 271.91 | 301.4 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9793
Sweep:
SWEEP1
Files:
/programs/datagrid/119/lu010_3_###.img
Images:
1 - 270
Beam:
(156.8, 154.1) -> (156.8, 155.15)
Distance:
280.0 -> 280.54
Spacegroup:
H 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.31 | 6.27 | 2.31 |
| Low resolution limit | 78.48 | 78.52 | 2.35 |
| Completeness | 99.5 | 99.0 | 99.9 |
| Multiplicity | 2.6 | 2.6 | 2.6 |
| I/sigma | 8.2 | 23.2 | 0.7 |
| Rmerge | 0.064 | 0.024 | 1.138 |
| CC half | 0.996 | 0.998 | 0.305 |
| Anomalous completeness | 89.3 | 93.7 | 87.1 |
| Anomalous multiplicity | 1.4 | 1.4 | 1.4 |
| Cell | 271.86 | 271.86 | 177.09 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.9793
Sweep:
SWEEP1
Files:
/programs/datagrid/119/lu010_3_###.img
Images:
1 - 270
Beam:
(156.8, 154.1) -> (156.8, 155.13)
Distance:
280.0 -> 280.25
Spacegroup:
R 3
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.24 | 6.08 | 2.24 |
| Low resolution limit | 82.79 | 82.85 | 2.28 |
| Completeness | 99.8 | 100.0 | 99.9 |
| Multiplicity | 2.6 | 2.7 | 2.6 |
| I/sigma | 7.3 | 42.7 | 0.2 |
| Rmerge | 0.09 | 0.036 | 1.282 |
| CC half | 0.991 | 0.992 | 0.234 |
| Anomalous completeness | 90.7 | 98.1 | 86.7 |
| Anomalous multiplicity | 1.4 | 1.4 | 1.4 |
| Cell | 271.576 | 271.576 | 176.914 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
